Evidence map›Paper›PMID 34194478›Full record

ArticleFrontiers in genetics2021

Genomic Landscape of Head and Neck Squamous Cell Carcinoma Across Different Anatomic Sites in Chinese Population.

Yunhe Ju, Xingrao Wu, Huizhen Wang, Bin Li, Qing Long, Dadong Zhang, Hao Chen, Nianqing Xiao, Fugen Li, Shiwen Zhang and 1 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in genetics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
2.9field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 20 citations in OpenAlex.

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  11. Frontiers in immunology · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 1 institution in 1 country.

Yunhe JuDepartment of Radiotherapy, The Third Affiliated Hospital of Kunming Medical University, Kunming, China.
Xingrao WuDepartment of Radiotherapy, The Third Affiliated Hospital of Kunming Medical University, Kunming, China.
Huizhen Wang3D Medicines Inc., Shanghai, China.
Bin Li3D Medicines Inc., Shanghai, China.
Qing LongDepartment of Radiotherapy, The Third Affiliated Hospital of Kunming Medical University, Kunming, China.
Dadong Zhang3D Medicines Inc., Shanghai, China.
Hao Chen3D Medicines Inc., Shanghai, China.
Nianqing Xiao3D Medicines Inc., Shanghai, China.
Fugen Li3D Medicines Inc., Shanghai, China.
Shiwen ZhangDepartment of Head and Neck Surgery, The Third Affiliated Hospital of Kunming Medical University, Kunming, China.
Shenggang YangDepartment of Radiotherapy, The Third Affiliated Hospital of Kunming Medical University, Kunming, China.
Kunming Medical University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe characteristics of head and neck squamous cell carcinoma (HNSCC) across different anatomic sites in the Chinese population have not been studied. To determine the genomic abnormalities underlying HNSCC across different anatomic sites, the alterations of selected cancer-related genes were evaluated.

methodsGenomic DNA samples obtained from formalin-fixed, paraffin-embedded tissues were analyzed using targeted sequencing in a panel of 383 cancer-related genes to determine the genomic alterations.

resultsA total of 317 formalin-fixed, paraffin-embedded HNSCC specimens were collected, and a total of 2,156 protein-coding mutations, including 1,864 single nucleotide variants and 292 insertions and deletions, were identified across more than six different anatomic sites. Mutation loads were distinct across the anatomic sites. Larynx carcinoma was found with the highest mutation loads, whereas nasopharynx carcinoma showed the lowest mutation loads. A total of 1,110 gains and 775 losses were identified in the 317 specimens. Patients who had at least one clinically actionable alteration (levels 1-4 in OncoKB) were identified. One patient had an actionable alteration with level 1 evidence in OncoKB,

conclusionThe genomic profiling of HNSCC using targeted sequencing can identify rational therapeutic candidate genes suitable for the treatment of the HNSCCs.

Indexed as

Chinese populationgenomic alterationHNSCCmutational landscapetargeted sequencing

Identifiers

PMID34194478
PMCPMC8236955
OpenAlexW3172390331

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.