Evidence map›Paper›PMID 34193856›Full record

ArticleHorticulture research2021

The R2R3-type MYB transcription factor MdMYB90-like is responsible for the enhanced skin color of an apple bud sport mutant.

Chao Sun, Chunming Wang, Wang Zhang, Shuai Liu, Weiyao Wang, Xinyi Yu, Tao Song, Maxwell Yu, Weichang Yu, Shenchun Qu

Open access · goldAbstract read
In one paragraph

Article in Horticulture research, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
3.4field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 63 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Chao SunCollege of Horticulture, Nanjing Agricultural University, No. 1 Weigang, 8210095, Nanjing, China.
Chunming WangGuangdong Key Laboratory of Plant Epigenetics, College of Life Sciences and Oceanography, Shenzhen University, 518060, Shenzhen, China.
Wang ZhangGuangdong Key Laboratory of Plant Epigenetics, College of Life Sciences and Oceanography, Shenzhen University, 518060, Shenzhen, China.
Shuai LiuGuangdong Key Laboratory of Plant Epigenetics, College of Life Sciences and Oceanography, Shenzhen University, 518060, Shenzhen, China.
Weiyao WangGuangdong Key Laboratory of Plant Epigenetics, College of Life Sciences and Oceanography, Shenzhen University, 518060, Shenzhen, China.
Xinyi YuCollege of Horticulture, Nanjing Agricultural University, No. 1 Weigang, 8210095, Nanjing, China.
Tao SongShenzhen Research Institute, The Chinese University of Hong Kong, Shenzhen, China.
Maxwell YuDepartment of Biomedical Engineering, Washington University in St.Louis, St.Louis, MO, 63130, USA.
Weichang YuGuangdong Key Laboratory of Plant Epigenetics, College of Life Sciences and Oceanography, Shenzhen University, 518060, Shenzhen, China. wyu@szu.edu.cn.ORCID http://orcid.org/0000-0003-0726-4239
Shenchun QuCollege of Horticulture, Nanjing Agricultural University, No. 1 Weigang, 8210095, Nanjing, China. qscnj@njau.edu.cn.
Shenzhen University · CNNanjing Agricultural University · CNChinese University of Hong Kong, Shenzhen · CNWashington University in St. Louis · US

Funding

National Science Foundation of China | National Natural Science Foundation of China-Yunnan Joint Fund (NSFC-Yunnan Joint Fund) 31671766National Science Foundation of China | National Natural Science Foundation of China-Yunnan Joint Fund (NSFC-Yunnan Joint Fund) 31872074Shenzhen Science and Technology Innovation Commission JCYJ20170818094958663Shenzhen Science and Technology Innovation Commission JCYJ20180305124101630Shenzhen Science and Technology Innovation Commission JCYJ20190808143207457
6 · The paper itself

Abstract

The anthocyanin content in apple skin determines its red coloration, as seen in a Fuji apple mutant. Comparative RNA-seq analysis was performed to determine differentially expressed genes at different fruit development stages between the wild-type and the skin color mutant. A novel R2R3-MYB transcription factor, MdMYB90-like, was uncovered as the key regulatory gene for enhanced coloration in the mutant. The expression of MdMYB90-like was 21.3 times higher in the mutant. MdMYB90-like regulates anthocyanin biosynthesis directly through the activation of anthocyanin biosynthesis genes and indirectly through the activation of other transcription factors that activate anthocyanin biosynthesis. MdMYB90-like bound to the promoters of both structural genes (MdCHS and MdUFGT) and other transcription factor genes (MdMYB1 and MdbHLH3) in the yeast one-hybrid system, electrophoretic mobility shift assay, and dual-luciferase assay. Transgenic analysis showed that MdMYB90-like was localized in the nucleus, and its overexpression induced the expression of other anthocyanin-related genes, including MdCHS, MdCHI, MdANS, MdUFGT, MdbHLH3, and MdMYB1. The mutant had reduced levels of DNA methylation in two regions (-1183 to -988 and -2018 to -1778) of the MdMYB90-like gene promoter, which might explain the enhanced expression of the gene and the increased anthocyanin content in the mutant apple skin.

Identifiers

PMID34193856
PMCPMC8245648
OpenAlexW3174092942

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.