Evidence map›Paper›PMID 34193826›Full record

ArticleHorticulture research2021

Sex biased expression of hormone related genes at early stage of sex differentiation in papaya flowers.

Juan Liu, Li-Yu Chen, Ping Zhou, Zhenyang Liao, Hai Lin, Qingyi Yu, Ray Ming

Open access · goldAbstract read
In one paragraph

Article in Horticulture research, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
6.3field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 29 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 3 countries.

Juan LiuFAFU and UIUC Joint Center for Genomics and Biotechnology, Key Laboratory of Genetics, Breeding and Multiple Utilization of Crops, Ministry of Education; Fujian Provincial Key Laboratory of Haixia Applied Plant Systems Biology; College of Life Science, Fujian Agriculture and Forestry University, Fuzhou, 350002, Fujian, China.
Li-Yu ChenFAFU and UIUC Joint Center for Genomics and Biotechnology, Key Laboratory of Genetics, Breeding and Multiple Utilization of Crops, Ministry of Education; Fujian Provincial Key Laboratory of Haixia Applied Plant Systems Biology; College of Life Science, Fujian Agriculture and Forestry University, Fuzhou, 350002, Fujian, China.ORCID http://orcid.org/0000-0002-5199-6237
Ping ZhouFAFU and UIUC Joint Center for Genomics and Biotechnology, Key Laboratory of Genetics, Breeding and Multiple Utilization of Crops, Ministry of Education; Fujian Provincial Key Laboratory of Haixia Applied Plant Systems Biology; College of Life Science, Fujian Agriculture and Forestry University, Fuzhou, 350002, Fujian, China.ORCID http://orcid.org/0000-0002-1738-2864
Zhenyang LiaoFAFU and UIUC Joint Center for Genomics and Biotechnology, Key Laboratory of Genetics, Breeding and Multiple Utilization of Crops, Ministry of Education; Fujian Provincial Key Laboratory of Haixia Applied Plant Systems Biology; College of Life Science, Fujian Agriculture and Forestry University, Fuzhou, 350002, Fujian, China.
Hai LinFAFU and UIUC Joint Center for Genomics and Biotechnology, Key Laboratory of Genetics, Breeding and Multiple Utilization of Crops, Ministry of Education; Fujian Provincial Key Laboratory of Haixia Applied Plant Systems Biology; College of Life Science, Fujian Agriculture and Forestry University, Fuzhou, 350002, Fujian, China.
Qingyi YuTexas A&M AgriLife Research Center at Dallas, Texas A&M University System, Dallas, TX, 75252, USA.ORCID http://orcid.org/0000-0001-5393-5764
Ray MingFAFU and UIUC Joint Center for Genomics and Biotechnology, Key Laboratory of Genetics, Breeding and Multiple Utilization of Crops, Ministry of Education; Fujian Provincial Key Laboratory of Haixia Applied Plant Systems Biology; College of Life Science, Fujian Agriculture and Forestry University, Fuzhou, 350002, Fujian, China. rayming@illinois.edu.ORCID http://orcid.org/0000-0002-9417-5789
Ministry of Education · BDTexas A&M University System · USUniversity of Illinois Urbana-Champaign · USWuhan Botanical Garden · CN

Funding

China Scholarship Council (CSC) 201608350085Fujian Provincial Department of Science and Technology (Department of Science and Technology of Fujian Province) 2015N20002-1National Science Foundation (NSF) DBI-1546890
6 · The paper itself

Abstract

Sex types of papaya are controlled by a pair of nascent sex chromosomes, but molecular genetic mechanisms of sex determination and sex differentiation in papaya are still unclear. We performed comparative analysis of transcriptomic profiles of male and female floral buds at the early development stage before the initiation of reproductive organ primordia at which there is no morphological difference between male and female flowers. A total of 1734 differentially expressed genes (DEGs) were identified, of which 923 showed female-biased expression and 811 showed male-biased expression. Functional annotation revealed that genes related to plant hormone biosynthesis and signaling pathways, especially in abscisic acid and auxin pathways, were overrepresented in the DEGs. Transcription factor binding motifs, such as MYB2, GAMYB, and AP2/EREBP, were enriched in the promoters of the hormone-related DEGs, and transcription factors with those motifs also exhibited differential expression between sex types. Among these DEGs, we also identified 11 genes in the non-recombining region of the papaya sex chromosomes and 9 genes involved in stamen and carpel development. Our results suggested that sex differentiation in papaya may be regulated by multiple layers of regulation and coordination and involved transcriptional, epigenetic, and phytohormone regulation. Hormones, especially ABA and auxin, transcription factors, and genes in the non-recombination region of the sex chromosome could be involved in this process. Our findings may facilitate the elucidation of signal transduction and gene interaction in sex differentiation of unisexual flowers in papaya.

Identifiers

PMID34193826
PMCPMC8245580
OpenAlexW3176030620

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.