Evidence map›Paper›PMID 34193042›Full record

ArticleBMC plant biology2021

Transcriptomics identifies key defense mechanisms in rice resistant to both leaf-feeding and phloem feeding herbivores.

Yi Li, Boon Huat Cheah, Yu-Fu Fang, Yun-Hung Kuang, Shau-Ching Lin, Chung-Ta Liao, Shou-Horng Huang, Ya-Fen Lin, Wen-Po Chuang

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.5field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 23 citations in OpenAlex.

  1. A dual role ofScience advances · 2026
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  9. Melatonin: The Multifaceted Molecule in Plant Growth and Defense.International journal of molecular sciences · 2024
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Yi Li *Department of Agronomy, National Taiwan University, Taipei, 10617, Taiwan.
Boon Huat Cheah *Department of Agronomy, National Taiwan University, Taipei, 10617, Taiwan.
Yu-Fu Fang *Department of Agronomy, National Taiwan University, Taipei, 10617, Taiwan.
Yun-Hung KuangDepartment of Agronomy, National Taiwan University, Taipei, 10617, Taiwan.
Shau-Ching LinDepartment of Agronomy, National Taiwan University, Taipei, 10617, Taiwan.
Chung-Ta LiaoCrop Environment Section, Taichung District Agricultural Research and Extension Station, COA, Changhua Country, 51544, Taiwan.
Shou-Horng HuangDepartment of Plant Protection, Chiayi Agricultural Experiment Station, Taiwan Agricultural Research Institute, Council of Agriculture, Chiayi, 60044, Taiwan.
Ya-Fen LinDepartment of Agronomy, National Taiwan University, Taipei, 10617, Taiwan.
Wen-Po ChuangDepartment of Agronomy, National Taiwan University, Taipei, 10617, Taiwan. wenpo@ntu.edu.tw.
National Taiwan University · TWCouncil of Agriculture · TW

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundOutbreaks of insect pests in paddy fields cause heavy losses in global rice yield annually, a threat projected to be aggravated by ongoing climate warming. Although significant progress has been made in the screening and cloning of insect resistance genes in rice germplasm and their introgression into modern cultivars, improved rice resistance is only effective against either chewing or phloem-feeding insects.

resultsIn this study, the results from standard and modified seedbox screening, settlement preference and honeydew excretion tests consistently showed that Qingliu, a previously known leaffolder-resistant rice variety, is also moderately resistant to brown planthopper (BPH). High-throughput RNA sequencing showed a higher number of differentially expressed genes (DEGs) at the infestation site, with 2720 DEGs in leaves vs 181 DEGs in sheaths for leaffolder herbivory and 450 DEGs in sheaths vs 212 DEGs in leaves for BPH infestation. The leaf-specific transcriptome revealed that Qingliu responds to leaffolder feeding by activating jasmonic acid biosynthesis genes and genes regulating the shikimate and phenylpropanoid pathways that are essential for the biosynthesis of salicylic acid, melatonin, flavonoids and lignin defensive compounds. The sheath-specific transcriptome revealed that Qingliu responds to BPH infestation by inducing salicylic acid-responsive genes and those controlling cellular signaling cascades. Taken together these genes could play a role in triggering defense mechanisms such as cell wall modifications and cuticular wax formation.

conclusionsThis study highlighted the key defensive responses of a rarely observed rice variety Qingliu that has resistance to attacks by two different feeding guilds of herbivores. The leaffolders are leaf-feeder while the BPHs are phloem feeders, consequently Qingliu is considered to have dual resistance. Although the defense responses of Qingliu to both insect pest types appear largely dissimilar, the phenylpropanoid pathway (or more specifically phenylalanine ammonia-lyase genes) could be a convergent upstream pathway. However, this possibility requires further studies. This information is valuable for breeding programs aiming to generate broad spectrum insect resistance in rice cultivars.

Indexed as

AnimalsCell WallCyclopentanesGene Expression ProfilingGene Expression Regulation, PlantGene OntologyHemipteraHerbivoryLipid MetabolismOryzaOxylipinsPhloemPlant Growth RegulatorsPlant LeavesSalicylic AcidShikimic AcidCyclopentanesjasmonic acidOxylipinsPlant Growth RegulatorsSalicylic AcidShikimic AcidCnaphalocrocis medinalisDual resistanceNilaparvata lugensOryza sativaRNA-Seq

Identifiers

PMID34193042
PMCPMC8243607
OpenAlexW3174885515

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.