ArticleNature2021
Untangling introductions and persistence in COVID-19 resurgence in Europe.
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Article in Nature, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 137 papers.
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137citing papers in PubMed
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Who cites it
137 citing papers in PubMed.
- Nosocomial transmission clusters and lineage diversity characterized by SARS-CoV-2 genomes from two large hospitals in Paris, France, in 2020.Scientific reports · 2022Trial
- Rapid Expansion of Highly Pathogenic Avian Influenza A(H5N1) Clade 2.3.4.4b Genotype D1.1 Virus across Flyway Regions, North America, Fall 2024.Emerging infectious diseases · 2026Article
- Genomic Diversity of Human Respiratory Syncytial Virus (HRSV) Type A in a Pediatric Cohort in the United States After the Onset of the COVID-19 Pandemic.Microorganisms · 2026Article
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- Genomic surveillance of a deeply sampled local population reveals age-specific drivers of RSV transmission.medRxiv : the preprint server for health sciences · 2026Article
- Ecological factors and genetic features are associated with ecological generalism in pathogenic tick-borne viruses.Nature communications · 2026Article
- Genomic epidemiology of the 2025 mpox epidemic in Sierra Leone.Nature medicine · 2026Article
- Viral introductions and return to baseline sexual behaviors maintain low-level mpox incidence in Los Angeles.Nature communications · 2026Article
- Two years of SARS-CoV-2 genomic surveillance capacity development in Guinea.Scientific reports · 2026Article
- Geographic and cross-species transmission of Mamastroviruses from multiple hosts.Animal microbiome · 2026Article
- Biological causes and impacts of rugged tree landscapes in phylodynamic inference.Proceedings of the National Academy of Sciences of the United States of America · 2026Article
- Reconstructing the early spatial spread of pandemic respiratory viruses in the United States.Proceedings of the National Academy of Sciences of the United States of America · 2026Article
- Widening East-West inequality in life expectancy in Europe during the COVID-19 pandemic: An international comparative study.PloS one · 2026Article
- Global spread and evolutionary trajectories of HIV-1 CRF01_AE: Insights from phylogenetic analysis.PloS one · 2026Article
- Reconstructing the early spatial spread of pandemic respiratory viruses in the United States.medRxiv : the preprint server for health sciences · 2025Article
- Navigating Sampling Bias in Discrete Phylogeographic Analysis: Assessing the Performance of an Adjusted Bayes Factor.Molecular biology and evolution · 2025Article
- HIPSTR: highest independent posterior subtree reconstruction in TreeAnnotator X.Bioinformatics (Oxford, England) · 2025Article
- Recent advances in the inference of deep viral evolutionary history.Journal of virology · 2025Review
- Clustering-based methodology for comparing multi-characteristic epidemiological dynamics with application to COVID-19 epidemiology in Europe.Royal Society open science · 2025Article
- Tracing SARS-CoV-2 clusters across local scales using genomic data.Proceedings of the National Academy of Sciences of the United States of America · 2025Article
77 more citing papers are in PubMed but not listed here.
Corrections and comments
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Authors and funding
17 authors.
Philippe LemeyDepartment of Microbiology, Immunology and Transplantation, Rega Institute, KU Leuven, Leuven, Belgium. philippe.lemey@kuleuven.be.ORCID http://orcid.org/0000-0003-2826-5353
Nick RuktanonchaiWorldPop, School of Geography and Environmental Science, University of Southampton, Southampton, UK.
Samuel L HongDepartment of Microbiology, Immunology and Transplantation, Rega Institute, KU Leuven, Leuven, Belgium.ORCID http://orcid.org/0000-0001-6354-4943
Vittoria ColizzaINSERM, Sorbonne Université, Institut Pierre Louis d'Epidémiologie et de Santé Publique IPLESP, Paris, France.ORCID http://orcid.org/0000-0002-2113-2374
Chiara PolettoINSERM, Sorbonne Université, Institut Pierre Louis d'Epidémiologie et de Santé Publique IPLESP, Paris, France.ORCID http://orcid.org/0000-0002-4051-1716
Frederik Van den BroeckDepartment of Microbiology, Immunology and Transplantation, Rega Institute, KU Leuven, Leuven, Belgium.
Mandev S GillDepartment of Microbiology, Immunology and Transplantation, Rega Institute, KU Leuven, Leuven, Belgium.
Xiang JiDepartment of Mathematics, School of Science & Engineering, Tulane University, New Orleans, LA, USA.ORCID http://orcid.org/0000-0002-7243-0865
Anthony LevasseurUMR MEPHI (Microbes, Evolution, Phylogeny and Infections), Aix-Marseille Université (AMU) and Institut Universitaire de France (IUF), Marseille, France.
Bas B Oude MunninkDepartment of Viroscience, WHO Collaborating Centre for Arbovirus and Viral Hemorrhagic Fever Reference and Research, Erasmus MC, Rotterdam, The Netherlands.ORCID http://orcid.org/0000-0002-9394-1189
Marion KoopmansDepartment of Viroscience, WHO Collaborating Centre for Arbovirus and Viral Hemorrhagic Fever Reference and Research, Erasmus MC, Rotterdam, The Netherlands.
Adam SadilekGoogle, Mountain View, CA, USA.ORCID http://orcid.org/0000-0003-0784-7098
Shengjie LaiWorldPop, School of Geography and Environmental Science, University of Southampton, Southampton, UK.ORCID http://orcid.org/0000-0001-9781-8148
Andrew J TatemWorldPop, School of Geography and Environmental Science, University of Southampton, Southampton, UK.ORCID http://orcid.org/0000-0002-7270-941X
Guy BaeleDepartment of Microbiology, Immunology and Transplantation, Rega Institute, KU Leuven, Leuven, Belgium.ORCID http://orcid.org/0000-0002-1915-7732
Marc A SuchardDepartment of Biomathematics, David Geffen School of Medicine, University of California Los Angeles, Los Angeles, CA, USA.ORCID http://orcid.org/0000-0001-9818-479X
Simon DellicourDepartment of Microbiology, Immunology and Transplantation, Rega Institute, KU Leuven, Leuven, Belgium. simon.dellicour@ulb.ac.be.ORCID http://orcid.org/0000-0001-9558-1052
Funding
Technology CoreU19AI135995 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI Kristian Graugaard Andersen · 2018 to 2026
$32.0MStatistical Innovation to Integrate Sequences and Phenotypes for Scalable Phylodynamic InferenceR01AI153044 · NIAID · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI Marc A. Suchard · 2021 to 2026
$2.4MEuropean Research CouncilNIAID NIH HHS R01 AI153044NIAID NIH HHS U19 AI135995Wellcome TrustWellcome Trust 206298/Z/17/Z
Abstract
After the first wave of SARS-CoV-2 infections in spring 2020, Europe experienced a resurgence of the virus starting in late summer 2020 that was deadlier and more difficult to contain
Indexed as
COVID-19EuropeGenome, ViralHumansIncidenceLocomotionPhylogenyPhylogeographySARS-CoV-2Time FactorsTravel
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.