Evidence map›Paper›PMID 34192534›Full record

ArticleCell reports2021

Medulloblastoma uses GABA transaminase to survive in the cerebrospinal fluid microenvironment and promote leptomeningeal dissemination.

Vahan Martirosian, Krutika Deshpande, Hao Zhou, Keyue Shen, Kyle Smith, Paul Northcott, Michelle Lin, Vazgen Stepanosyan, Diganta Das, Jan Remsik and 11 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Cell reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
5.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 53 citations in OpenAlex.

  1. Review
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  3. Article
  4. Article
  5. Article
  6. What Epigenetics Teaches Us About Neuron-Glioma Interactions.BioEssays : news and reviews in molecular, cellular and developmental biology · 2025
    Review
  7. Article
  8. Article
  9. Review
  10. Review
  11. Article
  12. The path to leptomeningeal metastasis.Nature reviews. Cancer · 2024
    Review
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  14. Article
  15. Review
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

21 authors at 5 institutions in 1 country.

Vahan MartirosianDepartment of Neurological Surgery, Keck School of Medicine, University of Southern California, Los Angeles, CA 90089, USA; USC Brain Tumor Center, University of Southern California, Los Angeles, CA 90089, USA.
Krutika DeshpandeDepartment of Neurological Surgery, Keck School of Medicine, University of Southern California, Los Angeles, CA 90089, USA; USC Brain Tumor Center, University of Southern California, Los Angeles, CA 90089, USA.
Hao ZhouDepartment of Biomedical Engineering, Viterbi School of Engineering, University of Southern California, Los Angeles, CA 90089, USA.
Keyue ShenDepartment of Biomedical Engineering, Viterbi School of Engineering, University of Southern California, Los Angeles, CA 90089, USA; Norris Comprehensive Cancer Center, University of Southern California, Los Angeles, CA 90089, USA.
Kyle SmithDepartment of Developmental Neurobiology, St. Jude Children's Research Hospital, Memphis, TN 38105, USA.
Paul NorthcottDepartment of Developmental Neurobiology, St. Jude Children's Research Hospital, Memphis, TN 38105, USA.
Michelle LinDepartment of Neurological Surgery, Keck School of Medicine, University of Southern California, Los Angeles, CA 90089, USA.
Vazgen StepanosyanDepartment of Neurological Surgery, Keck School of Medicine, University of Southern California, Los Angeles, CA 90089, USA.
Diganta DasDepartment of Neurological Surgery, Keck School of Medicine, University of Southern California, Los Angeles, CA 90089, USA.
Jan RemsikHuman Oncology and Pathogenesis Program, Department of Neuro-Oncology, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.
Danielle IsakovHuman Oncology and Pathogenesis Program, Department of Neuro-Oncology, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.
Adrienne BoireHuman Oncology and Pathogenesis Program, Department of Neuro-Oncology, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.
Henk De FeyterMagnetic Resonance Research Center, Department of Radiology and Biomedical Imaging, Yale University School of Medicine, New Haven, CT 06510, USA.
Kyle HurthDepartment of Pathology, Keck School of Medicine, University of Southern California, Los Angeles, CA 90089, USA; USC Brain Tumor Center, University of Southern California, Los Angeles, CA 90089, USA.
Shaobo LiCenter for Genetic Epidemiology, Department of Preventative Medicine, Keck School of Medicine, University of Southern California, Los Angeles, CA 90089, USA.
Joseph WiemelsCenter for Genetic Epidemiology, Department of Preventative Medicine, Keck School of Medicine, University of Southern California, Los Angeles, CA 90089, USA; Norris Comprehensive Cancer Center, University of Southern California, Los Angeles, CA 90089, USA.
Brooke NakamuraDivision of Gastrointestinal and Liver Diseases, Department of Medicine, Keck School of Medicine, University of Southern California, Los Angeles, CA 90089, USA.
Ling ShaoDivision of Gastrointestinal and Liver Diseases, Department of Medicine, Keck School of Medicine, University of Southern California, Los Angeles, CA 90089, USA; Norris Comprehensive Cancer Center, University of Southern California, Los Angeles, CA 90089, USA.
Camelia DanilovDepartment of Neurological Surgery, Keck School of Medicine, University of Southern California, Los Angeles, CA 90089, USA.
Thomas ChenDepartment of Neurological Surgery, Keck School of Medicine, University of Southern California, Los Angeles, CA 90089, USA; USC Brain Tumor Center, University of Southern California, Los Angeles, CA 90089, USA.
Josh NemanDepartment of Neurological Surgery, Keck School of Medicine, University of Southern California, Los Angeles, CA 90089, USA; Norris Comprehensive Cancer Center, University of Southern California, Los Angeles, CA 90089, USA; USC Brain Tumor Center, University of Southern California, Los Angeles, CA 90089, USA. Electronic address: yebrahim@usc.edu.
University of Southern California · USMemorial Sloan Kettering Cancer Center · USNeurological Surgery · USSt. Jude Children's Research Hospital · USYale University · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Hongbiao Carl Lekaye · 1985 to 2026
$347.4M
USC/NORRIS COMPREHENSIVE CANCER CENTER (CORE) SUPPORTP30CA014089 · NCI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI MYLES G COCKBURN · 1985 to 2026
$181.4M
Yale Clinical and Translational Science Award (U Component)UL1TR001863 · NCATS · YALE UNIVERSITY · PI John H. Krystal, LUCILA OHNO-MACHADO · 2016 to 2026
$102.9M
USC RESEARCH CENTER FOR LIVER DISEASES: PILOT PROGRAMSP30DK048522 · NIDDK · UNIVERSITY OF SOUTHERN CALIFORNIA · PI OOKHTENS, MURAD · 1995 to 2020
$21.8M
(PQ5) Microenvironmental Regulation of Mitochondrial Heterogeneity in Cancer MetastasisR01CA220012 · NCI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI SHEN, KEYUE · 2019 to 2023
$2.2M
The Role of GABA Transaminase ABAT in Pediatric Brain Tumor Medulloblastoma Development and SpreadR01NS133038 · NINDS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI ANAT ERDREICH-EPSTEIN, Josh Neman-Ebrahim · 2023 to 2026
$2.2M
NCATS NIH HHS UL1 TR001863NCI NIH HHS L30 CA242554NCI NIH HHS P30 CA008748NCI NIH HHS P30 CA014089NCI NIH HHS R01 CA220012NIDDK NIH HHS P30 DK048522NINDS NIH HHS R01 NS133038
6 · The paper itself

Abstract

Medulloblastoma (MB) is a malignant pediatric brain tumor arising in the cerebellum. Although abnormal GABAergic receptor activation has been described in MB, studies have not yet elucidated the contribution of receptor-independent GABA metabolism to MB pathogenesis. We find primary MB tumors globally display decreased expression of GABA transaminase (ABAT), the protein responsible for GABA metabolism, compared with normal cerebellum. However, less aggressive WNT and SHH subtypes express higher ABAT levels compared with metastatic G3 and G4 tumors. We show that elevated ABAT expression results in increased GABA catabolism, decreased tumor cell proliferation, and induction of metabolic and histone characteristics mirroring GABAergic neurons. Our studies suggest ABAT expression fluctuates depending on metabolite changes in the tumor microenvironment, with nutrient-poor conditions upregulating ABAT expression. We find metastatic MB cells require ABAT to maintain viability in the metabolite-scarce cerebrospinal fluid by using GABA as an energy source substitute, thereby facilitating leptomeningeal metastasis formation.

Indexed as

Tumor Microenvironment4-Aminobutyrate TransaminaseAcetylationAnimalsCell DifferentiationCell Line, TumorCell ProliferationCell SurvivalCerebellar NeoplasmsFemalegamma-Aminobutyric AcidHistone Deacetylase 3Histone DeacetylasesHistonesLysineMedulloblastoma4-Aminobutyrate Transaminasegamma-Aminobutyric AcidHistone Deacetylase 3Histone DeacetylasesHistonesLysineABATcerebrospinal fluidGABA shuntleptomeningeal diseasemedulloblastomaoxidative phosphorylationtumor dormancytumor microenvironment

Identifiers

PMID34192534
PMCPMC8848833
OpenAlexW3174062300

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.