Evidence map›Paper›PMID 34191829›Full record

ArticlePloS one2021

A CRISPR-based assay for the study of eukaryotic DNA repair onboard the International Space Station.

Sarah Stahl-Rommel, David Li, Michelle Sung, Rebecca Li, Aarthi Vijayakumar, Kutay Deniz Atabay, G Guy Bushkin, Christian L Castro, Kevin D Foley, D Scott Copeland and 4 more

Abstract read
In one paragraph

Article in PloS one, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Sarah Stahl-RommelJES Tech, Houston, Texas, United States of America.
David LiWoodbury High School, Woodbury, Minnesota, United States of America.ORCID 0000-0002-8921-5168
Michelle SungMounds View High School, Arden Hills, Minnesota, United States of America.
Rebecca LiMounds View High School, Arden Hills, Minnesota, United States of America.
Aarthi VijayakumarMounds View High School, Arden Hills, Minnesota, United States of America.
Kutay Deniz AtabayMassachusetts Institute of Technology, Cambridge, Massachusetts, United States of America.
G Guy BushkinMassachusetts Institute of Technology, Cambridge, Massachusetts, United States of America.
Christian L CastroJES Tech, Houston, Texas, United States of America.ORCID 0000-0003-2271-0073
Kevin D FoleyBoeing Defense, Space & Security, Berkley, Michigan, United States of America.
D Scott CopelandBoeing Defense, Space & Security, Berkley, Michigan, United States of America.
Sarah L Castro-WallaceBiomedical Research and Environmental Sciences Division, NASA Johnson Space Center, Houston, Texas, United States of America.
Ezequiel Alvarez SaavedraMiniPCR Bio, Cambridge, Massachusetts, United States of America.
Emily J GleasonMiniPCR Bio, Cambridge, Massachusetts, United States of America.ORCID 0000-0001-6875-8609
Sebastian KravesMiniPCR Bio, Cambridge, Massachusetts, United States of America.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

As we explore beyond Earth, astronauts may be at risk for harmful DNA damage caused by ionizing radiation. Double-strand breaks are a type of DNA damage that can be repaired by two major cellular pathways: non-homologous end joining, during which insertions or deletions may be added at the break site, and homologous recombination, in which the DNA sequence often remains unchanged. Previous work suggests that space conditions may impact the choice of DNA repair pathway, potentially compounding the risks of increased radiation exposure during space travel. However, our understanding of this problem has been limited by technical and safety concerns, which have prevented integral study of the DNA repair process in space. The CRISPR/Cas9 gene editing system offers a model for the safe and targeted generation of double-strand breaks in eukaryotes. Here we describe a CRISPR-based assay for DNA break induction and assessment of double-strand break repair pathway choice entirely in space. As necessary steps in this process, we describe the first successful genetic transformation and CRISPR/Cas9 genome editing in space. These milestones represent a significant expansion of the molecular biology toolkit onboard the International Space Station.

Indexed as

AstronautsCosmic RadiationCRISPR-Cas SystemsDNA Breaks, Double-StrandedDNA, FungalDNA RepairGene EditingHumansMutagenesisMutationOccupational ExposureSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSpacecraftDNA, FungalSaccharomyces cerevisiae ProteinsURA3 protein, S cerevisiae

Identifiers

PMID34191829
PMCPMC8244870

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.