Evidence map›Paper›PMID 34190604›Full record

ArticleMicrobiology spectrum2021

Structure and Long-Term Stability of the Microbiome in Diverse Diatom Cultures.

Marcelo Malisano Barreto Filho, Melissa Walker, Matt P Ashworth, J Jeffrey Morris

Open access · goldAbstract read
In one paragraph

Article in Microbiology spectrum, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 21 citations in OpenAlex.

  1. Review
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  12. A mutant fitness assay identifies bacterial interactions in a model ocean hot spot.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  13. Article
  14. The microbiome of the dinoflagellateFrontiers in microbiology · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Marcelo Malisano Barreto Filho *Department of Biology, University of Alabama at Birmingham, Birmingham, Alabama, USA.ORCID 0000-0001-8392-5006
Melissa Walker *Department of Biology, University of Alabama at Birmingham, Birmingham, Alabama, USA.ORCID 0000-0002-7803-6834
Matt P AshworthDepartment of Integrative Biology, University of Texas, Austin, Texas, USA.ORCID 0000-0002-4162-2004
J Jeffrey MorrisDepartment of Biology, University of Alabama at Birmingham, Birmingham, Alabama, USA.ORCID 0000-0001-9079-0082
University of Alabama at Birmingham · USThe University of Texas at Austin · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Microalgal cultures are often maintained in xenic conditions, i.e., with associated bacteria, and many studies indicate that these communities both are complex and have significant impacts on the physiology of the target photoautotroph. Here, we investigated the structure and stability of microbiomes associated with a diverse sampling of diatoms during long-term maintenance in serial batch culture. We found that, counter to our initial expectation, evenness diversity increased with time since cultivation, driven by a decrease in dominance by the most abundant taxa in each culture. We also found that the site from which and time at which a culture was initially collected had a stronger impact on microbiome structure than the diatom species; however, some bacterial taxa were commonly present in most cultures despite having widely geographically separated collection sites. Our results support the conclusion that stochastic initial conditions (i.e., the local microbial community at the collection site) are important for the long-term structure of these microbiomes, but deterministic forces such as negative frequency dependence and natural selection exerted by the diatom are also at work.

Indexed as

MicrobiotaBacteriaBiodiversityCell Culture TechniquesDiatomsPhylogenyalgal cultureblack queen hypothesisdiatomhistorical contingencymicrobiomenegative frequency dependencephycosphere

Identifiers

PMID34190604
PMCPMC8552671
OpenAlexW3176237781

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.