Evidence map›Paper›PMID 34188048›Full record

ArticleNature communications2021

Synchronization of gene expression across eukaryotic communities through chemical rhythms.

Sara Pérez-García, Mario García-Navarrete, Diego Ruiz-Sanchis, Cristina Prieto-Navarro, Merisa Avdovic, Ornella Pucciariello, Krzysztof Wabnik

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Dynamic context-dependent regulation of auxin feedback signaling in synthetic gene circuits.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  3. Article
  4. Seasonality, density dependence, and spatial population synchrony.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Sara Pérez-García *Centro de Biotecnologıa y Genomica de Plantas (Universidad Politecnica de Madrid-Instituto Nacional de Investigacion y Tecnologıa Agraria y Alimentaria), Pozuelo de Alarcon, Spain.ORCID 0000-0003-0059-1181
Mario García-Navarrete *Centro de Biotecnologıa y Genomica de Plantas (Universidad Politecnica de Madrid-Instituto Nacional de Investigacion y Tecnologıa Agraria y Alimentaria), Pozuelo de Alarcon, Spain.ORCID 0000-0002-1899-8206
Diego Ruiz-SanchisCentro de Biotecnologıa y Genomica de Plantas (Universidad Politecnica de Madrid-Instituto Nacional de Investigacion y Tecnologıa Agraria y Alimentaria), Pozuelo de Alarcon, Spain.ORCID 0000-0002-2497-071X
Cristina Prieto-NavarroCentro de Biotecnologıa y Genomica de Plantas (Universidad Politecnica de Madrid-Instituto Nacional de Investigacion y Tecnologıa Agraria y Alimentaria), Pozuelo de Alarcon, Spain.
Merisa AvdovicCentro de Biotecnologıa y Genomica de Plantas (Universidad Politecnica de Madrid-Instituto Nacional de Investigacion y Tecnologıa Agraria y Alimentaria), Pozuelo de Alarcon, Spain.
Ornella PucciarielloCentro de Biotecnologıa y Genomica de Plantas (Universidad Politecnica de Madrid-Instituto Nacional de Investigacion y Tecnologıa Agraria y Alimentaria), Pozuelo de Alarcon, Spain.ORCID 0000-0002-5241-5385
Krzysztof WabnikCentro de Biotecnologıa y Genomica de Plantas (Universidad Politecnica de Madrid-Instituto Nacional de Investigacion y Tecnologıa Agraria y Alimentaria), Pozuelo de Alarcon, Spain. k.wabnik@upm.es.ORCID 0000-0001-7263-0560
Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The synchronization is a recurring phenomenon in neuroscience, ecology, human sciences, and biology. However, controlling synchronization in complex eukaryotic consortia on extended spatial-temporal scales remains a major challenge. Here, to address this issue we construct a minimal synthetic system that directly converts chemical signals into a coherent gene expression synchronized among eukaryotic communities through rate-dependent hysteresis. Guided by chemical rhythms, isolated colonies of yeast Saccharomyces cerevisiae oscillate in near-perfect synchrony despite the absence of intercellular coupling or intrinsic oscillations. Increased speed of chemical rhythms and incorporation of feedback in the system architecture can tune synchronization and precision of the cell responses in a growing cell collectives. This synchronization mechanism remain robust under stress in the two-strain consortia composed of toxin-sensitive and toxin-producing strains. The sensitive cells can maintain the spatial-temporal synchronization for extended periods under the rhythmic toxin dosages produced by killer cells. Our study provides a simple molecular framework for generating global coordination of eukaryotic gene expression through dynamic environment.

Indexed as

Biochemical PhenomenaCell CycleGene ExpressionGene Expression Regulation, FungalRepressor ProteinsSaccharomyces cerevisiaeRepressor Proteins

Identifiers

PMID34188048
PMCPMC8242030
OpenAlexW3176084821

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.