Evidence map›Paper›PMID 34188039›Full record

ArticleNature communications2021

Non-invasive plasma glycomic and metabolic biomarkers of post-treatment control of HIV.

Leila B Giron, Clovis S Palmer, Qin Liu, Xiangfan Yin, Emmanouil Papasavvas, Radwa Sharaf, Behzad Etemad, Mohammad Damra, Aaron R Goldman, Hsin-Yao Tang and 9 more

Abstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 1 synthesis or guideline pooled it.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Leila B Giron *The Wistar Institute, Philadelphia, PA, USA.
Clovis S Palmer *The Burnet Institute, Melbourne, VIC, Australia.
Qin LiuThe Wistar Institute, Philadelphia, PA, USA.ORCID 0000-0001-9964-580X
Xiangfan YinThe Wistar Institute, Philadelphia, PA, USA.
Emmanouil PapasavvasThe Wistar Institute, Philadelphia, PA, USA.
Radwa SharafDepartment of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA.ORCID 0000-0002-5214-380X
Behzad EtemadDepartment of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA.
Mohammad DamraThe Wistar Institute, Philadelphia, PA, USA.
Aaron R GoldmanThe Wistar Institute, Philadelphia, PA, USA.ORCID 0000-0001-7605-9592
Hsin-Yao TangThe Wistar Institute, Philadelphia, PA, USA.ORCID 0000-0003-1838-018X
Rowena JohnstonamfAR, The Foundation for AIDS Research, New York, NY, USA.ORCID 0000-0002-5027-737X
Karam MounzerPhiladelphia FIGHT, Philadelphia, PA, USA.
Jay R KostmanPhiladelphia FIGHT, Philadelphia, PA, USA.
Pablo TebasUniversity of Pennsylvania, Philadelphia, PA, USA.
Alan LandayRush University, Chicago, IL, USA.
Luis J MontanerThe Wistar Institute, Philadelphia, PA, USA.ORCID 0000-0001-5799-6759
Jeffrey M JacobsonCase Western Reserve University School of Medicine, Cleveland, OH, USA.
Jonathan Z LiDepartment of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA.ORCID 0000-0001-9914-9662
Mohamed Abdel-MohsenThe Wistar Institute, Philadelphia, PA, USA. mmohsen@Wistar.org.ORCID 0000-0002-9945-4314

Funding

Leadership and Operations Center (LOC), AIDS Clinical Trials Group (ACTG); LOC 1/UM1AI068636 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Joseph J Eron, RAJESH T GANDHI · 2011 to 2026
$1073.1M
Statistical and Data Management Center (SDMC), AIDS Clinical Trials Group (ACTG)UM1AI068634 · NIAID · HARVARD UNIVERSITY D/B/A HARVARD SCHOOL OF PUBLIC HEALTH · PI Marlene Ann Cooper, Michael David Hughes · 2011 to 2026
$246.6M
Validation, CLIA and Qualification (VQC): Enhancing the RS ratio as a tool for AIDS Clinical Trial Group (ACTG) tuberculosis trialsUM1AI106701 · NIAID · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI Grace M Aldrovandi · 2014 to 2026
$116.8M
Virus & Reservoirs CoreP30AI045008 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI DAVID S METZGER · 1999 to 2026
$78.6M
Tumor Microenvironment and MetastasisP30CA010815 · NCI · WISTAR INSTITUTE · PI Luis J Montaner · 1985 to 2026
$75.9M
Statistical and Data Management Center for the AIDS Clinical Trials GroupU01AI068634 · NIAID · HARVARD SCHOOL OF PUBLIC HEALTH · PI HUGHES, MICHAEL DAVID · 2006 to 2010
$71.9M
University of Pennsylvania HIV Clinical Trials UnitUM1AI069534 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI Ian Frank, PABLO TEBAS · 2012 to 2026
$33.0M
First-in-human study of two anti-SARS CoV-2 antibodies in health volunteersUM1AI126620 · NIAID · WISTAR INSTITUTE · PI MONTANER, LUIS J, RILEY, JAMES L. · 2016 to 2021
$24.5M
Role of Intestinal Barrier Integrity in Modulating the Host Glycome During COVID-19R01DK123733 · NIDDK · WISTAR INSTITUTE · PI ABDEL MOHSEN, MOHAMED, KESHAVARZIAN, ALI · 2020 to 2024
$4.5M
Host Glycomic Modulation of HIV-associated Neuro-inflammation During Viral SuppressionR01NS117458 · NINDS · WISTAR INSTITUTE · PI ABDEL MOHSEN, MOHAMED, NDHLOVU, LISHOMWA C · 2020 to 2023
$3.4M
Targeting Siglec-9/Sialoglycan Interactions to Enhance NK Functions During HIV InfectionR01AI165079 · NIAID · WISTAR INSTITUTE · PI ABDEL MOHSEN, MOHAMED, XIAO, HAN · 2021 to 2025
$3.1M
Sialic Acid Modulation of HIV-associated Chronic InflammagingR01AG062383 · NIA · WISTAR INSTITUTE · PI ABDEL MOHSEN, MOHAMED · 2019 to 2023
$3.0M
NCI NIH HHS P30 CA010815NCI NIH HHS R50 CA221838NIAID NIH HHS P30 AI045008NIAID NIH HHS R01 AI048398NIAID NIH HHS R01 AI165079NIAID NIH HHS R21 AI129636NIAID NIH HHS R21 AI143385NIAID NIH HHS U01 AI068634NIAID NIH HHS UM1 AI068634NIAID NIH HHS UM1 AI068636NIAID NIH HHS UM1 AI069534NIAID NIH HHS UM1 AI106701NIAID NIH HHS UM1 AI126620NIA NIH HHS R01 AG062383NIDDK NIH HHS R01 DK123733NIH HHS S10 OD023586NINDS NIH HHS R01 NS117458NINDS NIH HHS R21 NS106970
6 · The paper itself

Abstract

Non-invasive biomarkers that predict HIV remission after antiretroviral therapy (ART) interruption are urgently needed. Such biomarkers can improve the safety of analytic treatment interruption (ATI) and provide mechanistic insights into the host pathways involved in post-ART HIV control. Here we report plasma glycomic and metabolic signatures of time-to-viral-rebound and probability-of-viral-remission using samples from two independent cohorts. These samples include a large number of post-treatment controllers, a rare population demonstrating sustained virologic suppression after ART-cessation. These signatures remain significant after adjusting for key demographic and clinical confounders. We also report mechanistic links between some of these biomarkers and HIV latency reactivation and/or myeloid inflammation in vitro. Finally, machine learning algorithms, based on selected sets of these biomarkers, predict time-to-viral-rebound with 74% capacity and probability-of-viral-remission with 97.5% capacity. In summary, we report non-invasive plasma biomarkers, with potential functional significance, that predict both the duration and probability of HIV remission after treatment interruption.

Indexed as

Withholding TreatmentAdultAnti-Retroviral AgentsBiomarkersCohort StudiesDNA, ViralFemaleGlycomicsHIV InfectionsHumansInflammationMacrophagesMaleMetabolomicsMiddle AgedProportional Hazards ModelsAnti-Retroviral AgentsBiomarkersDNA, ViralRNA, Viral

Identifiers

PMID34188039
PMCPMC8241829

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.