Evidence map›Paper›PMID 34187875›Full record

ArticleLife science alliance2021

Deletion of a pseudogene within a fragile site triggers the oncogenic expression of the mitotic CCSER1 gene.

Benedetta M Santoliquido, Michela Frenquelli, Claudia Contadini, Stefano Bestetti, Marco Gaviraghi, Elisa Barbieri, Anna De Antoni, Luca Albarello, Angelo Amabile, Alessandro Gardini and 6 more

Open access · goldAbstract read
In one paragraph

Article in Life science alliance, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.3field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 2 citations in OpenAlex.

  1. Article
  2. Identification ofFrontiers in veterinary science · 2026
    Article
  3. Article
  4. Genetic Elements at the Alpha-Synuclein Locus.Frontiers in neuroscience · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 4 institutions in 2 countries.

Benedetta M SantoliquidoFunctional Genomics of Cancer Unit, Division of Experimental Oncology, Istituti di Ricovero e Cura a Carattere Scientifico (IRCCS) San Raffaele Scientific Institute, Milan, Italy.
Michela FrenquelliFunctional Genomics of Cancer Unit, Division of Experimental Oncology, Istituti di Ricovero e Cura a Carattere Scientifico (IRCCS) San Raffaele Scientific Institute, Milan, Italy.
Claudia ContadiniUnit of Cellular Networks and Molecular Therapeutic Targets, IRCCS-Regina Elena National Cancer Institute, Rome, Italy.ORCID 0000-0003-4017-661X
Stefano BestettiProtein Transport and Secretion Unit, Division of Genetics and Cell Biology, IRCCS San Raffaele Scientific Institute, Milan, Italy.
Marco GaviraghiFunctional Genomics of Cancer Unit, Division of Experimental Oncology, Istituti di Ricovero e Cura a Carattere Scientifico (IRCCS) San Raffaele Scientific Institute, Milan, Italy.ORCID 0000-0003-2791-3638
Elisa BarbieriThe Wistar Institute, Gene Expression and Regulation Program, Philadelphia, PA, USA.
Anna De AntoniDNA Metabolism Laboratory, IFOM-The Firc Institute of Molecular Oncology, Milan, Italy.ORCID 0000-0003-4908-1684
Luca AlbarelloPathology Unit, IRCCS San Raffaele Scientific Institute, Milan, Italy.
Angelo AmabileVita-Salute San Raffaele University, Milan, Italy.
Alessandro GardiniThe Wistar Institute, Gene Expression and Regulation Program, Philadelphia, PA, USA.
Angelo LombardoVita-Salute San Raffaele University, Milan, Italy.
Claudio DoglioniVita-Salute San Raffaele University, Milan, Italy.
Paolo ProveroCenter for Omics Sciences, IRCCS San Raffaele Scientific Institute, Milan, Italy.ORCID 0000-0001-8664-8630
Silvia SodduUnit of Cellular Networks and Molecular Therapeutic Targets, IRCCS-Regina Elena National Cancer Institute, Rome, Italy.
Davide CittaroCenter for Omics Sciences, IRCCS San Raffaele Scientific Institute, Milan, Italy.ORCID 0000-0003-0384-3700
Giovanni TononFunctional Genomics of Cancer Unit, Division of Experimental Oncology, Istituti di Ricovero e Cura a Carattere Scientifico (IRCCS) San Raffaele Scientific Institute, Milan, Italy tonon.giovanni@hsr.it.ORCID 0000-0003-2973-5038
Istituti di Ricovero e Cura a Carattere Scientifico · ITVita-Salute San Raffaele University · ITThe Wistar Institute · USIFOM · IT

Funding

Tumor Microenvironment and MetastasisP30CA010815 · NCI · WISTAR INSTITUTE · PI Luis J Montaner · 1985 to 2026
$75.9M
NCI NIH HHS P30 CA010815
6 · The paper itself

Abstract

The oncogenic role of common fragile sites (CFS), focal and pervasive gaps in the cancer genome arising from replicative stress, remains controversial. Exploiting the TCGA dataset, we found that in most CFS the genes residing within the associated focal deletions are down-regulated, including proteins involved in tumour immune recognition. In a subset of CFS, however, the residing genes are surprisingly overexpressed. Within the most frequent CFS in this group, FRA4F, which is deleted in up to 18% of cancer cases and harbours the CCSER1 gene, we identified a region which includes an intronic, antisense pseudogene, TMSB4XP8. TMSB4XP8 focal ablation or transcriptional silencing elicits the overexpression of

Indexed as

Chromosome Fragile SitesGene DeletionUp-RegulationCell Cycle ProteinsCell LineCell ProliferationGene Expression Regulation, NeoplasticGenomic InstabilityHEK293 CellsHeLa CellsHumansMitosisPseudogenesCCSER1 protein, humanCell Cycle Proteins

Identifiers

PMID34187875
PMCPMC8321653
OpenAlexW3173257117

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.