Evidence map›Paper›PMID 34187599›Full record

ArticleEpigenetics & chromatin2021

The zinc finger protein CLAMP promotes long-range chromatin interactions that mediate dosage compensation of the Drosophila male X-chromosome.

William Jordan, Erica Larschan

Abstract read
In one paragraph

Article in Epigenetics & chromatin, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
  2. Article
  3. N-terminus ofeLife · 2024
    Article
  4. Article
  5. Article
  6. Set2 and H3K36 regulate thebioRxiv : the preprint server for biology · 2024
    Article
  7. Article
  8. Article
  9. Dosage Compensation inInternational journal of molecular sciences · 2022
    Review
  10. Combinatorial clustering of distinct DNA motifs directs synergistic binding ofProceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  11. Dimerization Activity of a Disordered N-Terminal Domain fromInternational journal of molecular sciences · 2022
    Article
4 · The record

Corrections and comments

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5 · Who and what money

Authors and funding

2 authors.

William JordanDepartment of Molecular Biology, Cellular Biology and Biochemistry, Brown University, Providence, RI, USA.
Erica LarschanDepartment of Molecular Biology, Cellular Biology and Biochemistry, Brown University, Providence, RI, USA. erica_larschan@brown.edu.ORCID 0000-0003-2484-4921

Funding

Establishment of Active Chromatin DomainsR35GM126994 · NIGMS · BROWN UNIVERSITY · PI LARSCHAN, ERICA NICOLE · 2018 to 2022
$2.0M
Howard Hughes Medical InstituteNIGMS NIH HHS R35 GM126994
6 · The paper itself

Abstract

backgroundDrosophila dosage compensation is an important model system for defining how active chromatin domains are formed. The male-specific lethal dosage compensation complex (MSLc) increases transcript levels of genes along the length of the single male X-chromosome to equalize with that expressed from the two female X-chromosomes. The strongest binding sites for MSLc cluster together in three-dimensional space largely independent of MSLc because clustering occurs in both sexes. CLAMP, a non-sex specific, ubiquitous zinc finger protein, binds synergistically with MSLc to enrich the occupancy of both factors on the male X-chromosome.

resultsHere, we demonstrate that CLAMP promotes the observed three-dimensional clustering of MSLc binding sites. Moreover, the X-enriched CLAMP protein more strongly promotes longer-range three-dimensional interactions on the X-chromosome than autosomes. Genome-wide, CLAMP promotes three-dimensional interactions between active chromatin regions together with other insulator proteins.

conclusionOverall, we define how long-range interactions which are modulated by a locally enriched ubiquitous transcription factor promote hyper-activation of the X-chromosome to mediate dosage compensation.

Indexed as

DrosophilaDrosophila ProteinsAnimalsChromatinDNA-Binding ProteinsDosage Compensation, GeneticFemaleMaleX ChromosomeZinc FingersChromatinCLAMP protein, DrosophilaDNA-Binding ProteinsDrosophila ProteinsChromatinDosage compensationDrosophilaMSL complexThree-dimensional genome organizationTranscription

Identifiers

PMID34187599
PMCPMC8240218

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.