Evidence map›Paper›PMID 34187359›Full record

ArticleBMC plant biology2021

Reduced free asparagine in wheat grain resulting from a natural deletion of TaASN-B2: investigating and exploiting diversity in the asparagine synthetase gene family to improve wheat quality.

Joseph Oddy, Rocío Alarcón-Reverte, Mark Wilkinson, Karl Ravet, Sarah Raffan, Andrea Minter, Andrew Mead, J Stephen Elmore, Isabel Moreira de Almeida, Nicholas C Cryer and 2 more

Abstract read
In one paragraph

Article in BMC plant biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

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  9. Article
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  12. New Insight into Aspartate Metabolic Pathways inInternational journal of molecular sciences · 2022
    Article
  13. Review
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Joseph OddyPlant Sciences Department, Rothamsted Research, Harpenden, Hertfordshire, AL5 2JQ, UK.
Rocío Alarcón-ReverteDepartment of Soil and Crop Sciences, Colorado State University, Fort Collins, CO, 80523, USA.
Mark WilkinsonPlant Sciences Department, Rothamsted Research, Harpenden, Hertfordshire, AL5 2JQ, UK.
Karl RavetDepartment of Soil and Crop Sciences, Colorado State University, Fort Collins, CO, 80523, USA.
Sarah RaffanPlant Sciences Department, Rothamsted Research, Harpenden, Hertfordshire, AL5 2JQ, UK.
Andrea MinterComputational and Analytical Sciences Department, Rothamsted Research, Harpenden, Hertfordshire, AL5 2JQ, UK.
Andrew MeadComputational and Analytical Sciences Department, Rothamsted Research, Harpenden, Hertfordshire, AL5 2JQ, UK.
J Stephen ElmoreDepartment of Food & Nutritional Sciences, University of Reading, Whiteknights, Reading, RG6 6DZ, UK.
Isabel Moreira de AlmeidaMondelēz R&D International, Paris Saclay Tech Center, 6 Rue René Razel, 91400, Saclay, France.
Nicholas C CryerMondelēz UK R&D Ltd, Bournville Lane, Bournville, Birmingham, B30 2LU, UK.
Nigel G HalfordPlant Sciences Department, Rothamsted Research, Harpenden, Hertfordshire, AL5 2JQ, UK.
Stephen PearceDepartment of Soil and Crop Sciences, Colorado State University, Fort Collins, CO, 80523, USA. stephen.pearce@colostate.edu.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundUnderstanding the determinants of free asparagine concentration in wheat grain is necessary to reduce levels of the processing contaminant acrylamide in baked and toasted wheat products. Although crop management strategies can help reduce asparagine concentrations, breeders have limited options to select for genetic variation underlying this trait. Asparagine synthetase enzymes catalyse a critical step in asparagine biosynthesis in plants and, in wheat, are encoded by five homeologous gene triads that exhibit distinct expression profiles. Within this family, TaASN2 genes are highly expressed during grain development but TaASN-B2 is absent in some varieties.

resultsNatural genetic diversity in the asparagine synthetase gene family was assessed in different wheat varieties revealing instances of presence/absence variation and other polymorphisms, including some predicted to affect the function of the encoded protein. The presence and absence of TaASN-B2 was determined across a range of UK and global common wheat varieties and related species, showing that the deletion encompassing this gene was already present in some wild emmer wheat genotypes. Expression profiling confirmed that TaASN2 transcripts were only detectable in the grain, while TaASN3.1 genes were highly expressed during the early stages of grain development. TaASN-A2 was the most highly expressed TaASN2 homeologue in most assayed wheat varieties. TaASN-B2 and TaASN-D2 were expressed at similar, lower levels in varieties possessing TaASN-B2. Expression of TaASN-A2 and TaASN-D2 did not increase to compensate for the absence of TaASN-B2, so total TaASN2 expression was lower in varieties lacking TaASN-B2. Consequently, free asparagine concentrations in field-produced grain were, on average, lower in varieties lacking TaASN-B2, although the effect was lost when free asparagine accumulated to very high concentrations as a result of sulphur deficiency.

conclusionsSelecting wheat genotypes lacking the TaASN-B2 gene may be a simple and rapid way for breeders to reduce free asparagine concentrations in commercial wheat grain.

Indexed as

Gene DeletionAsparagineAspartate-Ammonia LigaseFood QualityGenes, PlantGenetic Association StudiesGenetic VariationTriticumAsparagineAspartate-Ammonia LigaseAcrylamideAsparagine metabolismAsparagine synthetaseFood safetyTriticum aestivumWheatWheat breeding

Identifiers

PMID34187359
PMCPMC8240372

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.