Evidence map›Paper›PMID 34184745›Full record

ArticlePlant & cell physiology2021

Physiological Role of Aerobic Fermentation Constitutively Expressed in an Aluminum-Tolerant Cell Line of Tobacco (Nicotiana tabacum).

Yoshiyuki Tsuchiya, Takuji Nakamura, Yohei Izumi, Keiki Okazaki, Takuro Shinano, Yasutaka Kubo, Maki Katsuhara, Takayuki Sasaki, Yoko Yamamoto

Erratum issuedOpen access · bronzeAbstract read
In one paragraph

Article in Plant & cell physiology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.8field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 9 citations in OpenAlex.

  1. Review
  2. Article
  3. From Division to Death: Metabolomic Analysis ofPlants (Basel, Switzerland) · 2024
    Article
  4. Plant Heterotrophic Cultures: No Food, No Growth.Plants (Basel, Switzerland) · 2024
    Review
  5. Article
  6. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

Yoshiyuki TsuchiyaInstitute of Plant Science and Resources, Okayama University, Chuo 2-20-1, Kurashiki, Okayama 710-0046, Japan.
Takuji NakamuraLowland Crop Rotation System Group, Division of Lowland Farming Research, Hokkaido Agricultural Research Center (HARC), NARO, 1 Hitsujigaoka, Toyohira-ku, Sapporo 062-8555, Japan.
Yohei IzumiInstitute of Plant Science and Resources, Okayama University, Chuo 2-20-1, Kurashiki, Okayama 710-0046, Japan.
Keiki OkazakiCentral Region Agricultural Research Center, NARO (CARC/NARO), 2-1-18 Kannondai, Tsukuba, Ibaraki 305-8666, Japan.
Takuro ShinanoLaboratory of Plant Nutrition, Graduate School of Agriculture, Hokkaido University, N9, W9, Kitaku, Sapporo, Hokkaido 060-8589, Japan.
Yasutaka KuboGraduate School of Environmental and Life Science, Okayama University, Tsushima, Okayama 700-8530, Japan.
Maki KatsuharaInstitute of Plant Science and Resources, Okayama University, Chuo 2-20-1, Kurashiki, Okayama 710-0046, Japan.ORCID 0000-0002-8264-3063
Takayuki SasakiInstitute of Plant Science and Resources, Okayama University, Chuo 2-20-1, Kurashiki, Okayama 710-0046, Japan.
Yoko YamamotoInstitute of Plant Science and Resources, Okayama University, Chuo 2-20-1, Kurashiki, Okayama 710-0046, Japan.ORCID 0000-0002-9349-9335
Okayama University · JPCentral Region Agricultural Research Center · JPHokkaido Agricultural Research Center · JPHokkaido University · JP

Funding

Japan Society for the Promotion of Science 21580078 and 24380039
6 · The paper itself

Abstract

Aluminum (Al)-tolerant tobacco cell line ALT301 derived from SL (wild-type) hardly exhibits Al-triggered reactive oxygen species (ROS) compared with SL. Molecular mechanism leading to this phenotype was investigated comparatively with SL. Under normal growth condition, metabolome data suggested the activation of glycolysis and lactate fermentation but the repression of the tricarboxylic acid (TCA) cycle in ALT301, namely aerobic fermentation, which seemed to be transcriptionally controlled partly by higher expression of genes encoding lactate dehydrogenase and pyruvate dehydrogenase kinase. Microarray and gene ontology analyses revealed the upregulation of the gene encoding related to APETALA2.3 (RAP2.3)-like protein, one of the group VII ethylene response factors (ERFVIIs), in ALT301. ERFVII transcription factors are known to be key regulators for hypoxia response that promotes substrate-level ATP production by glycolysis and fermentation. ERFVIIs are degraded under normoxia by the N-end rule pathway of proteolysis depending on both oxygen and nitric oxide (NO), and NO is produced mainly by nitrate reductase (NR) in plants. In ALT301, levels of the NR gene expression (NIA2), NR activity and NO production were all lower compared with SL. Consistently, the known effects of NO on respiratory pathways were also repressed in ALT301. Under Al-treatment condition, NO level increased in both lines but was lower in ALT301. These results suggest that the upregulation of the RAP2.3-like gene and the downregulation of the NIA2 gene and resultant NO depletion in ALT301 coordinately enhance aerobic fermentation, which seems to be related to a higher capacity to prevent ROS production in mitochondria under Al stress.

Indexed as

FermentationAluminumDrug ToleranceGene Expression Regulation, PlantNicotianaPlant ProteinsAluminumPlant ProteinsAerobic fermentationAluminum-tolerant tobacco cell lineGroup VII ethylene response factorsNitrate reductaseNitric oxideReactive oxygen species

Identifiers

PMID34184745
PMCPMC8981456
OpenAlexW4205867782

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.