Evidence map›Paper›PMID 34184208›Full record

ArticleJournal of clinical immunology2021

Normal IgH Repertoire Diversity in an Infant with ADA Deficiency After Gene Therapy.

Carolyn H Baloh, Samiksha A Borkar, Kai-Fen Chang, Jiqiang Yao, Michael S Hershfield, Suhag H Parikh, Donald B Kohn, Maureen M Goodenow, John W Sleasman, Li Yin

Open access · greenAbstract readCase Reports
In one paragraph

Article in Journal of clinical immunology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact, top 94% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 1 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 1 country.

Carolyn H BalohDivision of Allergy, Immunology and Pulmonary Medicine, Department of Pediatrics, Duke University School of Medicine, Durham, NC, USA.ORCID https://orcid.org/0000-0003-4939-7160
Samiksha A BorkarMolecular HIV Host Interaction Section, National Institute of Allergy and Infectious Diseases, Bethesda, MD, USA.ORCID https://orcid.org/0000-0002-6290-1088
Kai-Fen ChangMolecular HIV Host Interaction Section, National Institute of Allergy and Infectious Diseases, Bethesda, MD, USA.ORCID https://orcid.org/0000-0003-3893-7176
Jiqiang YaoDepartment of Biostatistics and bioinformatics, Moffitt Cancer Center, Tampa, FL, USA.
Michael S HershfieldDivision of Rheumatology and Immunology, Department of Medicine, Duke University Medical Center, Durham, NC, USA.ORCID https://orcid.org/0000-0003-3589-8554
Suhag H ParikhDivision of Blood and Marrow Transplantation, Department of Pediatrics, Duke University School of Medicine, Durham, NC, USA.ORCID https://orcid.org/0000-0002-6066-9852
Donald B KohnDivision of Hematology & Oncology, Department of Pediatrics, David Geffen School of Medicine at UCLA, Los Angeles, CA, USA.ORCID https://orcid.org/0000-0003-1840-6087
Maureen M GoodenowMolecular HIV Host Interaction Section, National Institute of Allergy and Infectious Diseases, Bethesda, MD, USA.ORCID https://orcid.org/0000-0002-4750-9627
John W SleasmanDivision of Allergy, Immunology and Pulmonary Medicine, Department of Pediatrics, Duke University School of Medicine, Durham, NC, USA. john.sleasman@duke.edu.ORCID http://orcid.org/0000-0003-0078-5867
Li YinMolecular HIV Host Interaction Section, National Institute of Allergy and Infectious Diseases, Bethesda, MD, USA.ORCID https://orcid.org/0000-0002-3317-4133
National Institute of Allergy and Infectious Diseases · USDuke University · USDuke Medical Center · USMoffitt Cancer Center · USUniversity of California, Los Angeles · US

Funding

RESEARCH TRAINING IN ALLERGY AND CLINICAL IMMUNOLOGYT32AI007062 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI David B. Peden, John W. Sleasman · 1985 to 2026
$6.1M
EFS-ADA Lentiviral Vector Transduction of Bone Marrow CD34+ Cells for ADA-SCIDU01AI100801 · NIAID · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI KOHN, DONALD B · 2012 to 2016
$3.2M
Effect of breast feeding on immunologic priming in young infants.R01AI100147 · NIAID · UNIVERSITY OF SOUTH FLORIDA · PI SLEASMAN, JOHN W. · 2012 to 2016
$2.5M
Preparing Genetic Counselors for Genomic Medicine ResearchT32HG008955 · NHGRI · DUKE UNIVERSITY · PI COONEY, KATHLEEN A, HAGA, SUSANNE · 2017 to 2021
$2.0M
Impact of maternal HIV infection on immune priming of their uninfected infantsR21HD102853 · NICHD · DUKE UNIVERSITY · PI SLEASMAN, JOHN W. · 2020 to 2021
$443k
NHGRI NIH HHS HG008955-01A1NHGRI NIH HHS T32 HG008955NIAID NIH HHS AI007062-38NIAID NIH HHS R01 AI100147NIAID NIH HHS R01 AI1001471NIAID NIH HHS T32 AI007062NIAID NIH HHS U01 AI100801NIAID NIH HHS UO1 AI100801NICHD NIH HHS R21 HD102853
6 · The paper itself

Abstract

purposeAdenosine deaminase (ADA) deficiency causes severe combined immunodeficiency (SCID) through an accumulation of toxic metabolites within lymphocytes. Recently, ADA deficiency has been successfully treated using lentiviral-transduced autologous CD34+ cells carrying the ADA gene. T and B cell function appears to be fully restored, but in many patients' B cell numbers remain low, and assessments of the immunoglobulin heavy (IgHV) repertoire following gene therapy are lacking.

methodsWe performed deep sequencing of IgHV repertoire in peripheral blood lymphocytes from a child following lentivirus-based gene therapy for ADA deficiency and compared to the IgHV repertoire in healthy infants and adults.

resultsAfter gene therapy, Ig diversity increased over time as evidenced by V, D, and J gene usage, N-additions, CDR3 length, extent of somatic hypermutation, and Ig class switching. There was the emergence of predominant IgHM, IgHG, and IgHA CDR3 lengths after gene therapy indicating successful oligoclonal expansion in response to antigens. This provides proof of concept for the feasibility and utility of molecular monitoring in following B cell reconstitution following gene therapy for ADA deficiency.

conclusionBased on deep sequencing, gene therapy resulted in an IgHV repertoire with molecular diversity similar to healthy infants.

Indexed as

Adenosine DeaminaseAgammaglobulinemiaEnzyme Replacement TherapyFemaleGenetic TherapyHumansImmunoglobulin Heavy ChainsInfantLymphocyte CountSevere Combined ImmunodeficiencyAdenosine DeaminaseImmunoglobulin Heavy Chainsadenosine deaminase deficiencyB cell repertoiregene therapyimmunoglobulin sequencingSevere combined immune deficiency (SCID)

Identifiers

PMID34184208
PMCPMC9906566
OpenAlexW3174383338

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.