Evidence map›Paper›PMID 34183052›Full record

ArticleClinical epigenetics2021

Oxygen concentration affects de novo DNA methylation and transcription in in vitro cultured oocytes.

Florence Naillat, Heba Saadeh, Joanna Nowacka-Woszuk, Lenka Gahurova, Fatima Santos, Shin-Ichi Tomizawa, Gavin Kelsey

Open access · goldAbstract read
In one paragraph

Article in Clinical epigenetics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 21 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 7 countries.

Florence NaillatEpigenetics Program, Babraham Institute, Cambridge, CB22 3AT, UK. Florence.naillat@oulu.fi.ORCID 0000-0003-3061-4460
Heba SaadehEpigenetics Program, Babraham Institute, Cambridge, CB22 3AT, UK.
Joanna Nowacka-WoszukEpigenetics Program, Babraham Institute, Cambridge, CB22 3AT, UK.
Lenka GahurovaEpigenetics Program, Babraham Institute, Cambridge, CB22 3AT, UK.
Fatima SantosEpigenetics Program, Babraham Institute, Cambridge, CB22 3AT, UK.
Shin-Ichi TomizawaEpigenetics Program, Babraham Institute, Cambridge, CB22 3AT, UK.
Gavin KelseyEpigenetics Program, Babraham Institute, Cambridge, CB22 3AT, UK. gavin.kelsey@babraham.ac.uk.
Babraham Institute · GBUniversity of Jordan · JO

Funding

Academy of Finland 311934Biotechnology and Biological Sciences Research CouncilBiotieteiden ja Ympäristön Tutkimuksen Toimikunta 243014583Medical Research Council G0800013Medical Research Council MR/K011332/1Swedish Insitute
6 · The paper itself

Abstract

backgroundReproductive biology methods rely on in vitro follicle cultures from mature follicles obtained by hormonal stimulation for generating metaphase II oocytes to be fertilised and developed into a healthy embryo. Such techniques are used routinely in both rodent and human species. DNA methylation is a dynamic process that plays a role in epigenetic regulation of gametogenesis and development. In mammalian oocytes, DNA methylation establishment regulates gene expression in the embryos. This regulation is particularly important for a class of genes, imprinted genes, whose expression patterns are crucial for the next generation. The aim of this work was to establish an in vitro culture system for immature mouse oocytes that will allow manipulation of specific factors for a deeper analysis of regulatory mechanisms for establishing transcription regulation-associated methylation patterns.

resultsAn in vitro culture system was developed from immature mouse oocytes that were grown to germinal vesicles (GV) under two different conditions: normoxia (20% oxygen, 20% O

conclusionsOur observations reveal changes in DNA methylation and transcripts between oocytes cultured in vitro with different oxygen concentrations and in vivo-grown murine oocytes. Oocytes grown under 20% O

Indexed as

DNA MethylationTranscriptomeAnimalsFemaleIn Vitro Oocyte Maturation TechniquesMiceMice, Inbred C57BLOocytesOxygenOxygen5% oxygenDNA methylationIn vitro cultureMouseNormoxiaOocyteTranscription

Identifiers

PMID34183052
PMCPMC8240245
OpenAlexW3174878763

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.