Evidence map›Paper›PMID 34182781›Full record

ArticlemBio2021

ATP Drives Efficient Terpene Biosynthesis in Marine Thraustochytrids.

Aiqing Zhang, Kaya Mernitz, Chao Wu, Wei Xiong, Yaodong He, Guangyi Wang, Xin Wang

Open access · goldAbstract read
In one paragraph

Article in mBio, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.0field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 19 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Aiqing ZhangSchool of Environmental Science and Engineering, Tianjin University, Tianjin, China.
Kaya MernitzDepartment of Microbiology, Miami University, Oxford, Ohio, USA.
Chao WuBiosciences Center, National Renewable Energy Laboratory, Golden, Colorado, USA.
Wei XiongBiosciences Center, National Renewable Energy Laboratory, Golden, Colorado, USA.
Yaodong HeSchool of Environmental Science and Engineering, Tianjin University, Tianjin, China.
Guangyi WangSchool of Environmental Science and Engineering, Tianjin University, Tianjin, China.
Xin WangDepartment of Microbiology, Miami University, Oxford, Ohio, USA.
Tianjin University · CNMiami University · USNational Laboratory of the Rockies · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Understanding carbon flux controlling mechanisms in a tangled metabolic network is an essential question of cell metabolism. Secondary metabolism, such as terpene biosynthesis, has evolved with low carbon flux due to inherent pathway constraints. Thraustochytrids are a group of heterotrophic marine unicellular protists and can accumulate terpenoids under the high-salt conditions in their natural environment. However, the mechanism behind terpene accumulation is not well understood. Here, we show that terpene biosynthesis in Thraustochytrium sp. ATCC 26185 is constrained by local thermodynamics in the mevalonate pathway. Thermodynamic analysis reveals metabolite limitation in the nondecarboxylative Claisen condensation of acetyl-coenzyme A (CoA) to the acetoacetyl-CoA step, catalyzed by the acetyl-CoA acetyltransferase (ACAT). Through a sodium-elicited mechanism, higher respiration leads to increased ATP investment into the mevalonate pathway, providing a strong thermodynamic driving force for enhanced terpene biosynthesis. Proteomic and metabolomic analyses further show that the increased ATP demands are fulfilled by shifting energy generation from carbohydrate to lipid oxidation. This study demonstrates a unique strategy in nature that uses ATP to drive a low-flux metabolic pathway, providing an alternative solution for efficient terpene metabolic engineering.

Indexed as

Biosynthetic PathwaysSecondary MetabolismAdenosine TriphosphateAquatic OrganismsMetabolic EngineeringMevalonic AcidStramenopilesTerpenesAdenosine TriphosphateMevalonic AcidTerpenesmevalonate pathwaysqualeneterpene metabolismthermodynamicsthraustochytridsβ-oxidation

Identifiers

PMID34182781
PMCPMC8262955
OpenAlexW3173655002

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.