Evidence map›Paper›PMID 34178559›Full record

ArticleIEEE access : practical innovations, open solutions2021

Discovery of a Generalization Gap of Convolutional Neural Networks on COVID-19 X-Rays Classification.

Kaoutar Ben Ahmed, Gregory M Goldgof, Rahul Paul, Dmitry B Goldgof, Lawrence O Hall

Abstract read
In one paragraph

Article in IEEE access : practical innovations, open solutions, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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  13. BEMD-3DCNN-based method for COVID-19 detection.Computers in biology and medicine · 2022
    Article
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  18. Lessons learned in transitioning to AI in the medical imaging of COVID-19.Journal of medical imaging (Bellingham, Wash.) · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Kaoutar Ben AhmedDepartment of Computer Science and Engineering, University of South Florida, Tampa, FL 33620, USA.ORCID 0000-0002-5269-8733
Gregory M GoldgofDepartment of Laboratory Medicine, The University of California, San Francisco, CA 94143, USA.ORCID 0000-0001-8732-9834
Rahul PaulDepartment of Radiation Oncology, Massachusetts General Hospital, Boston, MA 02115, USA.ORCID 0000-0003-1491-1166
Dmitry B GoldgofDepartment of Computer Science and Engineering, University of South Florida, Tampa, FL 33620, USA.ORCID 0000-0001-5461-863X
Lawrence O HallDepartment of Computer Science and Engineering, University of South Florida, Tampa, FL 33620, USA.ORCID 0000-0002-7898-8456

Funding

Enhancing Resident Investigation and Career Advancement in Cardiovascular and Pulmonary ScienceR38HL143581 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI BIBBINS-DOMINGO, KIRSTEN, HUANG, ALISON · 2018 to 2021
$1.4M
NHLBI NIH HHS R38 HL143581
6 · The paper itself

Abstract

A number of recent papers have shown experimental evidence that suggests it is possible to build highly accurate deep neural network models to detect COVID-19 from chest X-ray images. In this paper, we show that good generalization to unseen sources has not been achieved. Experiments with richer data sets than have previously been used show models have high accuracy on seen sources, but poor accuracy on unseen sources. The reason for the disparity is that the convolutional neural network model, which learns features, can focus on differences in X-ray machines or in positioning within the machines, for example. Any feature that a person would clearly rule out is called a confounding feature. Some of the models were trained on COVID-19 image data taken from publications, which may be different than raw images. Some data sets were of pediatric cases with pneumonia where COVID-19 chest X-rays are almost exclusively from adults, so lung size becomes a spurious feature that can be exploited. In this work, we have eliminated many confounding features by working with as close to raw data as possible. Still, deep learned models may leverage source specific confounders to differentiate COVID-19 from pneumonia preventing generalizing to new data sources (i.e. external sites). Our models have achieved an AUC of 1.00 on seen data sources but in the worst case only scored an AUC of 0.38 on unseen ones. This indicates that such models need further assessment/development before they can be broadly clinically deployed. An example of fine-tuning to improve performance at a new site is given.

Indexed as

chest X-ray imagesconfounderCoronavirus (COVID-19)deep learningpneumonia

Identifiers

PMID34178559
PMCPMC8224464

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.