Evidence map›Paper›PMID 34174890›Full record

ArticleJournal of nanobiotechnology2021

LED control of gene expression in a nanobiosystem composed of metallic nanoparticles and a genetically modified E. coli strain.

Hossein Alishah Aratboni, Nahid Rafiei, Larousse Khosravi Khorashad, Albert Isaac Lerma-Escalera, Francisco de Jesús Balderas-Cisneros, Zhaowei Liu, Abbas Alemzadeh, Sadasivan Shaji, José Ruben Morones-Ramírez

Erratum issuedAbstract read
In one paragraph

Article in Journal of nanobiotechnology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Review
  2. Article
  3. Applications of synthetic biology in medical and pharmaceutical fields.Signal transduction and targeted therapy · 2023
    Review
  4. Article
  5. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors.

Hossein Alishah Aratboni *Universidad Autónoma de Nuevo León, UANL. Facultad de Ciencias Químicas, Av. Universidad s/n. CD. Universitaria, San Nicolás de los Garza, 66451, Nuevo León, México.
Nahid Rafiei *Universidad Autónoma de Nuevo León, UANL. Facultad de Ciencias Químicas, Av. Universidad s/n. CD. Universitaria, San Nicolás de los Garza, 66451, Nuevo León, México.
Larousse Khosravi KhorashadDepartment of Electrical and Computer Engineering, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA, 92093, USA.
Albert Isaac Lerma-EscaleraUniversidad Autónoma de Nuevo León, UANL. Facultad de Ciencias Químicas, Av. Universidad s/n. CD. Universitaria, San Nicolás de los Garza, 66451, Nuevo León, México.
Francisco de Jesús Balderas-CisnerosUniversidad Autónoma de Nuevo León, UANL. Facultad de Ciencias Químicas, Av. Universidad s/n. CD. Universitaria, San Nicolás de los Garza, 66451, Nuevo León, México.
Zhaowei LiuDepartment of Electrical and Computer Engineering, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA, 92093, USA.
Abbas AlemzadehDepartment of Crop Production and Plant Breeding, School of Agriculture, Shiraz University, Km. 12 Shiraz-Isfahan highway, Bajgah area, 71441-65186, Shiraz, Iran. alemzadeh@shirazu.ac.ir.
Sadasivan ShajiUniversidad Autónoma de Nuevo León, UANL. Facultad de ingeniería mecánica y eléctrica, Universidad s/n. CD. Universitaria, 66451, Nuevo León, San Nicolás de los Garza, México.
José Ruben Morones-RamírezUniversidad Autónoma de Nuevo León, UANL. Facultad de Ciencias Químicas, Av. Universidad s/n. CD. Universitaria, San Nicolás de los Garza, 66451, Nuevo León, México. jose.moronesrmr@uanl.edu.mx.ORCID https://orcid.org/0000-0001-7009-686X

Funding

consejo nacional de ciencia y tecnologia (MX) 1502 Fronteras de la Ciencia
6 · The paper itself

Abstract

backgroundWithin the last decade, genetic engineering and synthetic biology have revolutionized society´s ability to mass-produce complex biological products within genetically-modified microorganisms containing elegantly designed genetic circuitry. However, many challenges still exist in developing bioproduction processes involving genetically modified microorganisms with complex or multiple gene circuits. These challenges include the development of external gene expression regulation methods with the following characteristics: spatial-temporal control and scalability, while inducing minimal permanent or irreversible system-wide conditions. Different stimuli have been used to control gene expression and mitigate these challenges, and they can be characterized by the effect they produce in the culture media conditions. Invasive stimuli that cause permanent, irreversible changes (pH and chemical inducers), non-invasive stimuli that cause partially reversible changes (temperature), and non-invasive stimuli that cause reversible changes in the media conditions (ultrasound, magnetic fields, and light).

methodsOpto-control of gene expression is a non-invasive external trigger that complies with most of the desired characteristics of an external control system. However, the disadvantage relies on the design of the biological photoreceptors and the necessity to design them to respond to a different wavelength for every bioprocess needed to be controlled or regulated in the microorganism. Therefore, this work proposes using biocompatible metallic nanoparticles as external controllers of gene expression, based on their ability to convert light into heat and the capacity of nanotechnology to easily design a wide array of nanostructures capable of absorbing light at different wavelengths and inducing plasmonic photothermal heating.

resultsHere, we designed a nanobiosystem that can be opto-thermally triggered using LED light. The nanobiosystem is composed of biocompatible gold nanoparticles and a genetically modified E. coli with a plasmid that allows mCherry fluorescent protein production at 37 °C in response to an RNA thermometer.

conclusionsThe LED-triggered photothermal protein production system here designed offers a new, cheaper, scalable switchable method, non-destructive for living organisms, and contribute toward the evolution of bioprocess production systems.

Indexed as

LightEscherichia coliGene ExpressionGoldHot TemperatureLuminescent ProteinsMetal NanoparticlesNanostructuresNanotechnologyParticle SizeRed Fluorescent ProteinTemperatureGoldLuminescent ProteinsRed Fluorescent ProteinBioprocess productionGold nanoparticlesMathematical model opto-thermal conversionMetallic nanoparticlesNanobiosystemOpto-thermal gene expressionOpto-thermal nanoconverters

Identifiers

PMID34174890
PMCPMC8236197

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.