Evidence map›Paper›PMID 34174070›Full record

ArticleNeuro-oncology2022

Deep learning-based automatic tumor burden assessment of pediatric high-grade gliomas, medulloblastomas, and other leptomeningeal seeding tumors.

Jian Peng, Daniel D Kim, Jay B Patel, Xiaowei Zeng, Jiaer Huang, Ken Chang, Xinping Xun, Chen Zhang, John Sollee, Jing Wu and 15 more

Erratum issuedOpen access · bronzeAbstract read
In one paragraph

Article in Neuro-oncology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
7.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 73 citations in OpenAlex.

  1. A case-control study of MRI features in pediatric atypical teratoid rhabdoid tumor and medulloblastoma.Child's nervous system : ChNS : official journal of the International Society for Pediatric Neurosurgery · 2026
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  16. Applications of Artificial Intelligence for Pediatric Cancer Imaging.AJR. American journal of roentgenology · 2024
    Review
  17. Article
  18. Article
  19. Article
  20. Updated Response Assessment in Neuro-Oncology (RANO) for Gliomas.Current neurology and neuroscience reports · 2024
    Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

25 authors at 10 institutions in 2 countries.

Jian PengDepartment of Neurology, The Second Xiangya Hospital of Central South University, Changsha, Hunan, China.
Daniel D KimDepartment of Diagnostic Imaging, Rhode Island Hospital and Alpert Medical School of Brown University, Providence, Rhode Island, USA.
Jay B PatelDepartment of Radiology, Martinos Center for Biomedical Imaging, Massachusetts General Hospital, Harvard Medical School, Boston, Massachusetts, USA.
Xiaowei ZengDepartment of Neurology, The Second Xiangya Hospital of Central South University, Changsha, Hunan, China.
Jiaer HuangSchool of Computer Science and Engineering, Central South University, Changsha, Hunan, China.
Ken ChangDepartment of Radiology, Martinos Center for Biomedical Imaging, Massachusetts General Hospital, Harvard Medical School, Boston, Massachusetts, USA.
Xinping XunDepartment of Neurology, The Second Xiangya Hospital of Central South University, Changsha, Hunan, China.
Chen ZhangDepartment of Neurology, The Second Xiangya Hospital of Central South University, Changsha, Hunan, China.
John SolleeDepartment of Diagnostic Imaging, Rhode Island Hospital and Alpert Medical School of Brown University, Providence, Rhode Island, USA.
Jing WuDepartment of Radiology, The Second Xiangya Hospital of Central South University, Changsha, Hunan, China.
Deepa J DalalDepartment of Radiology, Children's Hospital of Philadelphia, Philadelphia, Pennsylvania, USA.
Xue FengDepartment of Biomedical Engineering, University of Virginia, Charlottesville, Virginia, USA.
Hao ZhouDepartment of Neurology, Xiangya Hospital of Central South University, Changsha, Hunan, China.
Chengzhang ZhuDepartment of Neurology, The Second Xiangya Hospital of Central South University, Changsha, Hunan, China.
Beiji ZouSchool of Computer Science and Engineering, Central South University, Changsha, Hunan, China.
Ke JinDepartment of Radiology, Hunan Children's Hospital, Changsha, Hunan, China.
Patrick Y WenCenter for Neuro-Oncology, Dana Farber Cancer Institute, Boston, Massachusetts, USA.
Jerrold L BoxermanDepartment of Diagnostic Imaging, Rhode Island Hospital and Alpert Medical School of Brown University, Providence, Rhode Island, USA.
Katherine E WarrenDepartment of Pediatrics, Dana Farber Cancer Institute, Boston, Massachusetts, USA.
Tina Y PoussaintDepartment of Radiology, Boston Children's Hospital, Boston, Massachusetts, USA.
Lisa J StatesDepartment of Radiology, Children's Hospital of Philadelphia, Philadelphia, Pennsylvania, USA.
Jayashree Kalpathy-CramerDepartment of Radiology, Martinos Center for Biomedical Imaging, Massachusetts General Hospital, Harvard Medical School, Boston, Massachusetts, USA.
Li YangDepartment of Neurology, The Second Xiangya Hospital of Central South University, Changsha, Hunan, China.
Raymond Y HuangDepartment of Radiology, Brigham and Women's Hospital, Harvard Medical School, Boston, Massachusetts, USA.
Harrison X BaiDepartment of Diagnostic Imaging, Rhode Island Hospital and Alpert Medical School of Brown University, Providence, Rhode Island, USA.ORCID 0000-0002-7460-8866
Central South University · CNBrown University · USHarvard University · USChildren's Hospital of Philadelphia · USBoston Children's Hospital · USBrigham and Women's Hospital · USCenter for Neuro-Oncology · USDana-Farber Cancer Institute · USHunan Children's Hospital · CNUniversity of Virginia · US

Funding

Neuroimaging Training ProgramT32EB001680 · NIBIB · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI BRUCE R ROSEN · 2003 to 2026
$3.8M
Automatic Volumetric Treatment Response Assessment and Determination of Regional Genetic Characteristics in GlioblastomaF30CA239407 · NCI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI CHANG, KEN · 2019 to 2020
$101k
NCI NIH HHS F30 CA239407NIBIB NIH HHS T32 EB001680
6 · The paper itself

Abstract

backgroundLongitudinal measurement of tumor burden with magnetic resonance imaging (MRI) is an essential component of response assessment in pediatric brain tumors. We developed a fully automated pipeline for the segmentation of tumors in pediatric high-grade gliomas, medulloblastomas, and leptomeningeal seeding tumors. We further developed an algorithm for automatic 2D and volumetric size measurement of tumors.

methodsThe preoperative and postoperative cohorts were randomly split into training and testing sets in a 4:1 ratio. A 3D U-Net neural network was trained to automatically segment the tumor on T1 contrast-enhanced and T2/FLAIR images. The product of the maximum bidimensional diameters according to the RAPNO (Response Assessment in Pediatric Neuro-Oncology) criteria (AutoRAPNO) was determined. Performance was compared to that of 2 expert human raters who performed assessments independently. Volumetric measurements of predicted and expert segmentations were computationally derived and compared.

resultsA total of 794 preoperative MRIs from 794 patients and 1003 postoperative MRIs from 122 patients were included. There was excellent agreement of volumes between preoperative and postoperative predicted and manual segmentations, with intraclass correlation coefficients (ICCs) of 0.912 and 0.960 for the 2 preoperative and 0.947 and 0.896 for the 2 postoperative models. There was high agreement between AutoRAPNO scores on predicted segmentations and manually calculated scores based on manual segmentations (Rater 2 ICC = 0.909; Rater 3 ICC = 0.851). Lastly, the performance of AutoRAPNO was superior in repeatability to that of human raters for MRIs with multiple lesions.

conclusionsOur automated deep learning pipeline demonstrates potential utility for response assessment in pediatric brain tumors. The tool should be further validated in prospective studies.

Indexed as

Cerebellar NeoplasmsDeep LearningGliomaMedulloblastomaChildHumansImage Processing, Computer-AssistedMagnetic Resonance ImagingProspective StudiesTumor Burdenbraindeep learningresponse assessmentsegmentation

Identifiers

PMID34174070
PMCPMC8804897
OpenAlexW3173649406

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.