Evidence map›Paper›PMID 34172741›Full record

ArticleNature communications2021

Population genomics of apricots unravels domestication history and adaptive events.

Alexis Groppi, Shuo Liu, Amandine Cornille, Stéphane Decroocq, Quynh Trang Bui, David Tricon, Corinne Cruaud, Sandrine Arribat, Caroline Belser, William Marande and 27 more

Abstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 61 papers.

0numbers the graph read from it
0cells of the map it votes in
61citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

61 citing papers in PubMed.

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  10. Whole-genome resequencing of 495Horticulture research · 2026
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  12. Article
  13. Article
  14. Insights Into the Almond Domestication History.Evolutionary applications · 2025
    Article
  15. Article
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  18. Article
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  20. Article

1 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

37 authors.

Alexis Groppi *Univ. Bordeaux, Centre de Bioinformatique de Bordeaux (CBiB), Bordeaux, 33076, France.ORCID 0000-0002-3341-8281
Shuo Liu *Univ. Bordeaux, INRAE, UMR 1332 Biologie du Fruit et Pathologie, 71 Av. E. Bourlaux, Villenave d'Ornon, 33140, France.
Amandine Cornille *Université Paris Saclay, INRAE, CNRS, AgroParisTech, UMR GQE-Le Moulon, Gif-sur-Yvette, 91190, France.ORCID 0000-0002-5348-7081
Stéphane DecroocqUniv. Bordeaux, INRAE, UMR 1332 Biologie du Fruit et Pathologie, 71 Av. E. Bourlaux, Villenave d'Ornon, 33140, France.
Quynh Trang BuiUniv. Bordeaux, INRAE, UMR 1332 Biologie du Fruit et Pathologie, 71 Av. E. Bourlaux, Villenave d'Ornon, 33140, France.
David TriconUniv. Bordeaux, INRAE, UMR 1332 Biologie du Fruit et Pathologie, 71 Av. E. Bourlaux, Villenave d'Ornon, 33140, France.
Corinne CruaudGenoscope, Institut François Jacob, Commissariat à l'Energie Atomique (CEA), Université Paris-Saclay, 2 Rue Gaston Crémieux, Evry, 91057, France.
Sandrine ArribatFrench Plant Genomic Resource Center, INRAE-CNRGV, Castanet Tolosan, France.
Caroline BelserGenoscope, Institut François Jacob, Commissariat à l'Energie Atomique (CEA), Université Paris-Saclay, 2 Rue Gaston Crémieux, Evry, 91057, France.ORCID 0000-0002-8108-9910
William MarandeFrench Plant Genomic Resource Center, INRAE-CNRGV, Castanet Tolosan, France.
Jérôme SalseINRAE/UBP UMR 1095 GDEC Genetique, Diversite et Ecophysiologie des Cereales, Laboratory PaleoEVO Paleogenomics & Evolution, 5 Chemin de Beaulieu, Clermont Ferrand, 63100, France.
Cécile HuneauINRAE/UBP UMR 1095 GDEC Genetique, Diversite et Ecophysiologie des Cereales, Laboratory PaleoEVO Paleogenomics & Evolution, 5 Chemin de Beaulieu, Clermont Ferrand, 63100, France.
Nathalie RoddeFrench Plant Genomic Resource Center, INRAE-CNRGV, Castanet Tolosan, France.ORCID 0000-0003-3361-4730
Wassim RhalloussiFrench Plant Genomic Resource Center, INRAE-CNRGV, Castanet Tolosan, France.
Stéphane CauetFrench Plant Genomic Resource Center, INRAE-CNRGV, Castanet Tolosan, France.ORCID 0000-0003-4985-8940
Benjamin IstaceGenoscope, Institut François Jacob, Commissariat à l'Energie Atomique (CEA), Université Paris-Saclay, 2 Rue Gaston Crémieux, Evry, 91057, France.ORCID 0000-0003-1042-4803
Erwan DenisGenoscope, Institut François Jacob, Commissariat à l'Energie Atomique (CEA), Université Paris-Saclay, 2 Rue Gaston Crémieux, Evry, 91057, France.ORCID 0000-0002-6195-4620
Sébastien CarrèreLIPME, Université de Toulouse, INRAE, CNRS, Castanet-Tolosan, France.
Jean-Marc AudergonINRAE UR1052 GAFL, Domaine Saint Maurice, CS60094, Montfavet, 84143, France.
Guillaume RochINRAE UR1052 GAFL, Domaine Saint Maurice, CS60094, Montfavet, 84143, France.
Patrick LambertINRAE UR1052 GAFL, Domaine Saint Maurice, CS60094, Montfavet, 84143, France.
Tetyana ZhebentyayevaThe Schatz Center for Tree Molecular Genetics, Department of Ecosystem Science and Management, The Pennsylvania State University, University Park, 16802, PA, USA.
Wei-Sheng LiuLiaoning Institute of Pomology, Tiedong Street, Xiongyue, Bayuquan District, Yingkou City, 115009, Liaoning, China.
Olivier BouchezINRAE, US 1426, GeT-PlaGe, Genotoul, Castanet-Tolosan, 31326, France.
Céline Lopez-RoquesINRAE, US 1426, GeT-PlaGe, Genotoul, Castanet-Tolosan, 31326, France.
Rémy-Félix SerreINRAE, US 1426, GeT-PlaGe, Genotoul, Castanet-Tolosan, 31326, France.
Robert DebuchyUniversité Paris-Saclay, CEA, CNRS, Institute for Integrative Biology of the Cell (I2BC), Gif-sur-Yvette, 91198, France.ORCID 0000-0003-1206-0361
Joseph TranEGFV, Bordeaux Sciences Agro, INRAE, Univ. Bordeaux, ISVV, Villenave d'Ornon, 33882, France.
Patrick WinckerGenoscope, Institut François Jacob, Commissariat à l'Energie Atomique (CEA), Université Paris-Saclay, 2 Rue Gaston Crémieux, Evry, 91057, France.ORCID 0000-0001-7562-3454
Xilong ChenUniversité Paris Saclay, INRAE, CNRS, AgroParisTech, UMR GQE-Le Moulon, Gif-sur-Yvette, 91190, France.ORCID 0000-0003-1588-6564
Pierre PétriacqUniv. Bordeaux, INRAE, UMR 1332 Biologie du Fruit et Pathologie, 71 Av. E. Bourlaux, Villenave d'Ornon, 33140, France.ORCID 0000-0001-8151-7420
Aurélien BarreUniv. Bordeaux, Centre de Bioinformatique de Bordeaux (CBiB), Bordeaux, 33076, France.
Macha NikolskiUniv. Bordeaux, Centre de Bioinformatique de Bordeaux (CBiB), Bordeaux, 33076, France.ORCID 0000-0001-6059-577X
Jean-Marc AuryGenoscope, Institut François Jacob, Commissariat à l'Energie Atomique (CEA), Université Paris-Saclay, 2 Rue Gaston Crémieux, Evry, 91057, France.ORCID 0000-0003-1718-3010
Albert Glenn AbbottForest Health Research and Education Center, University of Kentucky, Lexington, KY, USA.
Tatiana GiraudEcologie Systématique et Evolution, CNRS, Université Paris-Saclay AgroParisTech, Orsay, 91400, France. veronique.decroocq@inrae.fr.ORCID 0000-0002-2685-6478
Véronique DecroocqUniv. Bordeaux, INRAE, UMR 1332 Biologie du Fruit et Pathologie, 71 Av. E. Bourlaux, Villenave d'Ornon, 33140, France. tatiana.giraud@u-psud.fr.ORCID 0000-0001-6745-6350

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Among crop fruit trees, the apricot (Prunus armeniaca) provides an excellent model to study divergence and adaptation processes. Here, we obtain nearly 600 Armeniaca apricot genomes and four high-quality assemblies anchored on genetic maps. Chinese and European apricots form two differentiated gene pools with high genetic diversity, resulting from independent domestication events from distinct wild Central Asian populations, and with subsequent gene flow. A relatively low proportion of the genome is affected by selection. Different genomic regions show footprints of selection in European and Chinese cultivated apricots, despite convergent phenotypic traits, with predicted functions in both groups involved in the perennial life cycle, fruit quality and disease resistance. Selection footprints appear more abundant in European apricots, with a hotspot on chromosome 4, while admixture is more pervasive in Chinese cultivated apricots. Our study provides clues to the biology of selected traits and targets for fruit tree research and breeding.

Indexed as

DomesticationChromosomes, PlantDisease ResistanceEvolution, MolecularFruitGene FlowGenetic VariationGenome, PlantLife Cycle StagesMetagenomicsPhenotypePhylogenyPrunus armeniacaSelection, Genetic

Identifiers

PMID34172741
PMCPMC8233370

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.