Evidence map›Paper›PMID 34172734›Full record

ArticleNature communications2021

Proton gradients from light-harvesting E. coli control DNA assemblies for synthetic cells.

Kevin Jahnke, Noah Ritzmann, Julius Fichtler, Anna Nitschke, Yannik Dreher, Tobias Abele, Götz Hofhaus, Ilia Platzman, Rasmus R Schröder, Daniel J Müller and 2 more

Abstract readVideo-Audio Media
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed.

  1. Review
  2. Let There be Light! Light as an Engine and Regulator in Synthetic Cells.Angewandte Chemie (International ed. in English) · 2026
    Review
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Review
  9. Polysaccharide functionalization reduces lipid vesicle stiffness.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  10. Article
  11. Light Color-Controlled pH-Adjustment of Aqueous Solutions Using Engineered Proteoliposomes.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2024
    Article
  12. Article
  13. Review
  14. Review
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Kevin JahnkeBiophysical Engineering Group, Max Planck Institute for Medical Research, Heidelberg, Germany.
Noah RitzmannDepartment of Biosystems Science and Engineering, Eidgenössische Technische Hochschule (ETH) Zurich, Basel, Switzerland.
Julius FichtlerBiophysical Engineering Group, Max Planck Institute for Medical Research, Heidelberg, Germany.
Anna NitschkeBiophysical Engineering Group, Max Planck Institute for Medical Research, Heidelberg, Germany.
Yannik DreherBiophysical Engineering Group, Max Planck Institute for Medical Research, Heidelberg, Germany.
Tobias AbeleBiophysical Engineering Group, Max Planck Institute for Medical Research, Heidelberg, Germany.
Götz HofhausCentre for Advanced Materials, Heidelberg, Germany.
Ilia PlatzmanMax Planck Institute for Medical Research, Department of Cellular Biophysics, Heidelberg, Germany.
Rasmus R SchröderCentre for Advanced Materials, Heidelberg, Germany.
Daniel J MüllerDepartment of Biosystems Science and Engineering, Eidgenössische Technische Hochschule (ETH) Zurich, Basel, Switzerland.ORCID http://orcid.org/0000-0003-3075-0665
Joachim P SpatzMax Planck Institute for Medical Research, Department of Cellular Biophysics, Heidelberg, Germany.
Kerstin GöpfrichBiophysical Engineering Group, Max Planck Institute for Medical Research, Heidelberg, Germany. kerstin.goepfrich@mr.mpg.de.ORCID http://orcid.org/0000-0003-2115-3551

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bottom-up and top-down approaches to synthetic biology each employ distinct methodologies with the common aim to harness living systems. Here, we realize a strategic merger of both approaches to convert light into proton gradients for the actuation of synthetic cellular systems. We genetically engineer E. coli to overexpress the light-driven inward-directed proton pump xenorhodopsin and encapsulate them in artificial cell-sized compartments. Exposing the compartments to light-dark cycles, we reversibly switch the pH by almost one pH unit and employ these pH gradients to trigger the attachment of DNA structures to the compartment periphery. For this purpose, a DNA triplex motif serves as a nanomechanical switch responding to the pH-trigger of the E. coli. When DNA origami plates are modified with the pH-sensitive triplex motif, the proton-pumping E. coli can trigger their attachment to giant unilamellar lipid vesicles (GUVs) upon illumination. A DNA cortex is formed upon DNA origami polymerization, which sculpts and deforms the GUVs. We foresee that the combination of bottom-up and top down approaches is an efficient way to engineer synthetic cells.

Indexed as

ProtonsDNA, BacterialEscherichia coliGenetic EngineeringHydrogen-Ion ConcentrationLightMicroorganisms, Genetically-ModifiedProton PumpsRhodopsinDNA, BacterialProton PumpsProtonsRhodopsin

Identifiers

PMID34172734
PMCPMC8233306

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.