ArticlePlant biotechnology journal2021
Reference genomes of the two cultivated jute species.
Article in Plant biotechnology journal, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.
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17 citing papers in PubMed, 49 citations in OpenAlex.
- Complete telomere-to-telomere genome assembly of Guazuma ulmifolia uncovers evolutionary mechanisms, drought adaptation, and flavonoid biosynthesis.Plant cell reports · 2026Article
- Genetic diversity and population structure of jute mallow (Corchorus olitorius L.) global collection to guide conservation and breeding.The plant genome · 2026Article
- High-quality draft genome assembly and functional annotation ofFrontiers in plant science · 2026Article
- Exploring the genomic landscape of mites and harnessing MITE insertion polymorphism markers in jute (Corchorus sp.).Scientific reports · 2025Article
- Reticulate allopolyploidy and subsequent dysploidy drive evolution and diversification in the cotton family.Nature communications · 2025Article
- Genome-wide analysis of the laccase gene family in tossa jute (Frontiers in plant science · 2025Article
- CountrywideFrontiers in plant science · 2025Article
- Upgraded durian genome reveals the role of chromosome reshuffling during ancestral karyotype evolution, lignin biosynthesis regulation, and stress tolerance.Science China. Life sciences · 2024Article
- Whole genome resequencing unveils low-temperature stress tolerance specific genomic variations in jute (Corchorus sp.).Journal, genetic engineering & biotechnology · 2024Article
- High-quality genomes of Bombax ceiba and Ceiba pentandra provide insights into the evolution of Malvaceae species and differences in their natural fiber development.Plant communications · 2024Article
- Haplotype-resolved chromosomal-level genome assembly of Buzhaye (Microcos paniculata).Scientific data · 2023Article
- Genome-wide association study reveals loci and candidate genes of flowering time in jute (Molecular breeding : new strategies in plant improvement · 2023Article
- Identification ofPlants (Basel, Switzerland) · 2023Article
- Systematic evolution ofFrontiers in plant science · 2023Article
- Intelligent Identification of Jute Pests Based on Transfer Learning and Deep Convolutional Neural Networks.Neural processing letters · 2022Article
- Article
- Reference genomes of the two cultivated jute species.Plant biotechnology journal · 2021Article
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Authors and funding
26 authors at 3 institutions in 3 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Cultivated jute, which comprises the two species Corchorus capsularis and C. olitorius, is the second most important natural fibre source after cotton. Here we describe chromosome-level assemblies of the genomes of both cultivated species. The C. capsularis and C. olitorius assemblies are each comprised of seven pseudo-chromosomes, with the C. capsularis assembly consisting of 336 Mb with 25,874 genes and the C. olitorius assembly containing 361 Mb with 28 479 genes. Although the two Corchorus genomes exhibit collinearity, the genome of C. olitorius contains 25 Mb of additional sequences than that of C. capsularis with 13 putative inversions, which might give a hint to the difference of phenotypic variants between the two cultivated jute species. Analysis of gene expression in isolated fibre tissues reveals candidate genes involved in fibre development. Our analysis of the population structures of 242 cultivars from C. capsularis and 57 cultivars from C. olitorius by whole-genome resequencing resulted in post-domestication bottlenecks occurred ~2000 years ago in these species. We identified hundreds of putative significant marker-trait associations (MTAs) controlling fibre fineness, cellulose content and lignin content of fibre by integrating data from genome-wide association studies (GWAS) with data from analyses of selective sweeps due to natural and artificial selection in these two jute species. Among them, we further validated that CcCOBRA1 and CcC4H1 regulate fibre quality in transgenic plants via improving the biosynthesis of the secondary cell wall. Our results yielded important new resources for functional genomics research and genetic improvement in jute and allied fibre crops.
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