Evidence map›Paper›PMID 34168324›Full record

ArticleNature cell biology2021

Epithelial cell plasticity drives endoderm formation during gastrulation.

Katharina Scheibner, Silvia Schirge, Ingo Burtscher, Maren Büttner, Michael Sterr, Dapeng Yang, Anika Böttcher, Ansarullah, Martin Irmler, Johannes Beckers and 4 more

Erratum issuedOpen access · hybridAbstract readVideo-Audio Media
In one paragraph

Article in Nature cell biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 63 papers.

0numbers the graph read from it
0cells of the map it votes in
63citing papers in PubMed
6.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

63 citing papers in PubMed, 101 citations in OpenAlex.

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  18. Core microRNAs regulate neural crest delamination and condensation in the developing trigeminal ganglion.Proceedings of the National Academy of Sciences of the United States of America · 2025
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3 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 2 countries.

Katharina Scheibner *Institute of Diabetes and Regeneration Research, Helmholtz Diabetes Center, Helmholtz Zentrum München, Munich, Germany.
Silvia Schirge *Institute of Diabetes and Regeneration Research, Helmholtz Diabetes Center, Helmholtz Zentrum München, Munich, Germany.
Ingo Burtscher *Institute of Diabetes and Regeneration Research, Helmholtz Diabetes Center, Helmholtz Zentrum München, Munich, Germany.
Maren BüttnerInstitute of Computational Biology, Helmholtz Zentrum München, Munich, Germany.ORCID http://orcid.org/0000-0002-6189-3792
Michael SterrInstitute of Diabetes and Regeneration Research, Helmholtz Diabetes Center, Helmholtz Zentrum München, Munich, Germany.
Dapeng YangDevelopmental Biology Program, Sloan Kettering Institute, New York, NY, USA.
Anika BöttcherInstitute of Diabetes and Regeneration Research, Helmholtz Diabetes Center, Helmholtz Zentrum München, Munich, Germany.ORCID http://orcid.org/0000-0001-5473-3136
AnsarullahInstitute of Diabetes and Regeneration Research, Helmholtz Diabetes Center, Helmholtz Zentrum München, Munich, Germany.
Martin IrmlerInstitute of Experimental Genetics, Helmholtz Zentrum München, Munich, Germany.ORCID http://orcid.org/0000-0003-3169-479X
Johannes BeckersGerman Center for Diabetes Research (DZD), Munich, Germany.
Filippo M CernilogarDivision of Molecular Biology, Biomedical Center, Faculty of Medicine, Ludwig Maximilian University, Munich, Germany.ORCID http://orcid.org/0000-0003-2814-3436
Gunnar SchottaDivision of Molecular Biology, Biomedical Center, Faculty of Medicine, Ludwig Maximilian University, Munich, Germany.
Fabian J TheisInstitute of Computational Biology, Helmholtz Zentrum München, Munich, Germany.ORCID http://orcid.org/0000-0002-2419-1943
Heiko LickertInstitute of Diabetes and Regeneration Research, Helmholtz Diabetes Center, Helmholtz Zentrum München, Munich, Germany. heiko.lickert@helmholtz-muenchen.de.ORCID http://orcid.org/0000-0002-4597-8825
Helmholtz Zentrum München · DELudwig-Maximilians-Universität München · DEKettering University · USTUM Klinikum · DE

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Hongbiao Carl Lekaye · 1985 to 2026
$347.4M
NCI NIH HHS P30 CA008748Wellcome TrustWellcome Trust 108413/A/15/D
6 · The paper itself

Abstract

It is generally accepted that epiblast cells ingress into the primitive streak by epithelial-to-mesenchymal transition (EMT) to give rise to the mesoderm; however, it is less clear how the endoderm acquires an epithelial fate. Here, we used embryonic stem cell and mouse embryo knock-in reporter systems to combine time-resolved lineage labelling with high-resolution single-cell transcriptomics. This allowed us to resolve the morphogenetic programs that segregate the mesoderm from the endoderm germ layer. Strikingly, while the mesoderm is formed by classical EMT, the endoderm is formed independent of the key EMT transcription factor Snail1 by mechanisms of epithelial cell plasticity. Importantly, forkhead box transcription factor A2 (Foxa2) acts as an epithelial gatekeeper and EMT suppressor to shield the endoderm from undergoing a mesenchymal transition. Altogether, these results not only establish the morphogenetic details of germ layer formation, but also have broader implications for stem cell differentiation and cancer metastasis.

Indexed as

Cell PlasticityEpithelial-Mesenchymal TransitionGastrulationAnimalsBlastocystCell DifferentiationCell LineEndodermEpithelial CellsGene Expression Regulation, DevelopmentalGestational AgeHepatocyte Nuclear Factor 3-betaMiceMice, TransgenicMouse Embryonic Stem CellsPhenotypeFoxa2 protein, mouseHepatocyte Nuclear Factor 3-betaSnai1 protein, mouseSnail Family Transcription Factors

Identifiers

PMID34168324
PMCPMC8277579
OpenAlexW3175315342

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.