Evidence map›Paper›PMID 34168275›Full record

ArticleCommunications biology2021

Resolving cell state in iPSC-derived human neural samples with multiplexed fluorescence imaging.

Martin L Tomov, Alison O'Neil, Hamdah S Abbasi, Beth A Cimini, Anne E Carpenter, Lee L Rubin, Mark Bathe

Abstract read
In one paragraph

Article in Communications biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Single-Cell Protein Assays in Context: From 2D to 3D and In Situ Analysis.Annual review of analytical chemistry (Palo Alto, Calif.) · 2026
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Martin L TomovStanley Center for Psychiatric Research, Broad Institute of MIT and Harvard, Cambridge, MA, USA.
Alison O'NeilStanley Center for Psychiatric Research, Broad Institute of MIT and Harvard, Cambridge, MA, USA.ORCID 0000-0002-0759-4740
Hamdah S AbbasiImaging Platform at Broad Institute of MIT and Harvard, Cambridge, MA, USA.
Beth A CiminiImaging Platform at Broad Institute of MIT and Harvard, Cambridge, MA, USA.
Anne E CarpenterImaging Platform at Broad Institute of MIT and Harvard, Cambridge, MA, USA.ORCID 0000-0003-1555-8261
Lee L RubinStanley Center for Psychiatric Research, Broad Institute of MIT and Harvard, Cambridge, MA, USA. lee_rubin@harvard.edu.ORCID 0000-0002-8658-841X
Mark BatheDepartment of Biological Engineering, MIT, Cambridge, MA, USA. mark.bathe@mit.edu.ORCID 0000-0002-6199-6855

Funding

TOXICOLOGY CORE UNITP30ES002109 · NIEHS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI LEVINE, STUART S · 1985 to 2020
$25.6M
Simultaneous profiling of neuronal synapse activities, proteins, and messenger RNAs at the single-cell levelR01MH112694 · NIMH · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI Mark Bathe · 2017 to 2026
$2.8M
Ultra-Multiplexed Nanoscale In Situ Proteomics for Understanding Synapse TypesU01MH106011 · NIMH · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI BATHE, MARK, BOYDEN, EDWARD S. · 2014 to 2016
$2.2M
NIEHS NIH HHS P30 ES002109NIMH NIH HHS R01 MH112694NIMH NIH HHS U01 MH106011
6 · The paper itself

Abstract

Human induced pluripotent stem cell-derived (iPSC) neural cultures offer clinically relevant models of human diseases, including Amyotrophic Lateral Sclerosis, Alzheimer's, and Autism Spectrum Disorder. In situ characterization of the spatial-temporal evolution of cell state in 3D culture and subsequent 2D dissociated culture models based on protein expression levels and localizations is essential to understanding neural cell differentiation, disease state phenotypes, and sample-to-sample variability. Here, we apply PRobe-based Imaging for Sequential Multiplexing (PRISM) to facilitate multiplexed imaging with facile, rapid exchange of imaging probes to analyze iPSC-derived cortical and motor neuron cultures that are relevant to psychiatric and neurodegenerative disease models, using over ten protein targets. Our approach permits analysis of cell differentiation, cell composition, and functional marker expression in complex stem-cell derived neural cultures. Furthermore, our approach is amenable to automation, offering in principle the ability to scale-up to dozens of protein targets and samples.

Indexed as

AnimalsCell DifferentiationCells, CulturedCerebral CortexHumansInduced Pluripotent Stem CellsMotor NeuronsOptical ImagingRats

Identifiers

PMID34168275
PMCPMC8225800

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.