Evidence map›Paper›PMID 34168223›Full record

ArticleScientific reports2021

Transmitting silks of maize have a complex and dynamic microbiome.

Eman M Khalaf, Anuja Shrestha, Jeffrey Rinne, Michael D J Lynch, Charles R Shearer, Victor Limay-Rios, Lana M Reid, Manish N Raizada

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
3.5field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Maize seed endophytes.Molecular plant pathology · 2023
    Review
  5. Article
  6. Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Eman M KhalafDepartment of Plant Agriculture, University of Guelph, 50 Stone Road E, Guelph, ON, N1G 2W1, Canada.
Anuja ShresthaDepartment of Plant Agriculture, University of Guelph, 50 Stone Road E, Guelph, ON, N1G 2W1, Canada.
Jeffrey RinneDepartment of Plant Agriculture, University of Guelph, 50 Stone Road E, Guelph, ON, N1G 2W1, Canada.
Michael D J LynchMetagenom Bio, 550 Parkside Drive, Unit A9, Waterloo, ON, N2L 5V4, Canada.
Charles R ShearerDepartment of Plant Agriculture, University of Guelph, 50 Stone Road E, Guelph, ON, N1G 2W1, Canada.
Victor Limay-RiosDepartment of Plant Agriculture, University of Guelph, Ridgetown Campus, 120 Main Street E, Ridgetown, ON, N0P 2C0, Canada.
Lana M ReidOttawa Research and Development Centre, Agriculture and Agri-Food Canada, 960 Carling Avenue, Central Experimental Farm, Ottawa, ON, K1A 0C6, Canada.
Manish N RaizadaDepartment of Plant Agriculture, University of Guelph, 50 Stone Road E, Guelph, ON, N1G 2W1, Canada. raizada@uoguelph.ca.
University of Guelph · CADamanhour University · EGOttawa Research and Development Centre

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In corn/maize, silks emerging from cobs capture pollen, and transmit resident sperm nuclei to eggs. There are > 20 million silks per U.S. maize acre. Fungal pathogens invade developing grain using silk channels, including Fusarium graminearum (Fg, temperate environments) and devastating carcinogen-producers (Africa/tropics). Fg contaminates cereal grains with mycotoxins, in particular Deoxynivalenol (DON), known for adverse health effects on humans and livestock. Fitness selection should promote defensive/healthy silks. Here, we report that maize silks, known as styles in other plants, possess complex and dynamic microbiomes at the critical pollen-fungal transmission interval (henceforth: transmitting style microbiome, TSM). Diverse maize genotypes were field-grown in two trial years. MiSeq 16S rRNA gene sequencing of 328 open-pollinated silk samples (healthy/Fg-infected) revealed that the TSM contains > 5000 taxa spanning the prokaryotic tree of life (47 phyla/1300 genera), including nitrogen-fixers. The TSM of silk tip tissue displayed seasonal responsiveness, but possessed a reproducible core of 7-11 MiSeq-amplicon sequence variants (ASVs) dominated by a single Pantoea MiSeq-taxon (15-26% of sequence-counts). Fg-infection collapsed TSM diversity and disturbed predicted metabolic functionality, but doubled overall microbiome size/counts, primarily by elevating 7-25 MiSeq-ASVs, suggestive of a selective microbiome response against infection. This study establishes the maize silk as a model for fundamental/applied research of plant reproductive microbiomes.

Indexed as

AfricaFusariumMicrobiotaMycotoxinsPollenPollinationRNA, Ribosomal, 16SSilkZea maysMycotoxinsRNA, Ribosomal, 16SSilk

Identifiers

PMID34168223
PMCPMC8225909
OpenAlexW3176996340

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.