Evidence map›Paper›PMID 34168142›Full record

ArticleNature communications2021

Interactions between large molecules pose a puzzle for reference quantum mechanical methods.

Yasmine S Al-Hamdani, Péter R Nagy, Andrea Zen, Dennis Barton, Mihály Kállay, Jan Gerit Brandenburg, Alexandre Tkatchenko

Abstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed.

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  13. Review
  14. Multi-Level Coupled-Cluster Description of Crystal Lattice Energies.Journal of chemical theory and computation · 2025
    Article
  15. Article
  16. Article
  17. Another Angle on Benchmarking Noncovalent Interactions.Journal of chemical theory and computation · 2025
    Article
  18. Article
  19. Article
  20. Overview of Developments in the MRCC Program System.The journal of physical chemistry. A · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Yasmine S Al-Hamdani *Department of Chemistry, University of Zurich, Zürich, Switzerland.
Péter R Nagy *Department of Physical Chemistry and Materials Science, Budapest University of Technology and Economics, Budapest, Hungary.ORCID 0000-0001-6692-0879
Andrea ZenDipartimento di Fisica Ettore Pancini, Università di Napoli Federico II, Monte S. Angelo, Napoli, Italy.ORCID 0000-0002-7648-4078
Dennis BartonDepartment of Physics and Materials Science, University of Luxembourg, Luxembourg, Luxembourg.
Mihály KállayDepartment of Physical Chemistry and Materials Science, Budapest University of Technology and Economics, Budapest, Hungary.
Jan Gerit BrandenburgMerck Data Office, Merck KGaA, Darmstadt, Germany. j.g.brandenburg@gmx.de.ORCID 0000-0002-9219-2948
Alexandre TkatchenkoDepartment of Physics and Materials Science, University of Luxembourg, Luxembourg, Luxembourg. alexandre.tkatchenko@uni.lu.ORCID 0000-0002-1012-4854

Funding

Accurate and Efficient Modeling of Biomolecular Ionic Interactions: Charge Redistribution, Polarization and DispersionR01GM118697 · NIGMS · UNIVERSITY OF SOUTH FLORIDA · PI VARMA, SAMEER · 2016 to 2019
$904k
NIGMS NIH HHS R01 GM118697
6 · The paper itself

Abstract

Quantum-mechanical methods are used for understanding molecular interactions throughout the natural sciences. Quantum diffusion Monte Carlo (DMC) and coupled cluster with single, double, and perturbative triple excitations [CCSD(T)] are state-of-the-art trusted wavefunction methods that have been shown to yield accurate interaction energies for small organic molecules. These methods provide valuable reference information for widely-used semi-empirical and machine learning potentials, especially where experimental information is scarce. However, agreement for systems beyond small molecules is a crucial remaining milestone for cementing the benchmark accuracy of these methods. We show that CCSD(T) and DMC interaction energies are not consistent for a set of polarizable supramolecules. Whilst there is agreement for some of the complexes, in a few key systems disagreements of up to 8 kcal mol

Indexed as

Models, ChemicalBenzeneDatabases, ChemicalDiffusionHydrogen BondingMonte Carlo MethodPyridinesQuantum TheoryStatic ElectricityUracilWaterBenzenepyridinePyridinesUracilWater

Identifiers

PMID34168142
PMCPMC8225865

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.