Evidence map›Paper›PMID 34168131›Full record

ArticleNature communications2021

Improved pyrrolysine biosynthesis through phage assisted non-continuous directed evolution of the complete pathway.

Joanne M L Ho, Corwin A Miller, Kathryn A Smith, Jacob R Mattia, Matthew R Bennett

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 20 citations in OpenAlex.

  1. Phage-assisted continuous evolution of enzymes for noncanonical tyrosine biosynthesis.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  2. Article
  3. Pyrrolysine refusing to stop.Nature chemistry · 2026
    Article
  4. Article
  5. Review
  6. Article
  7. Review
  8. Review
  9. Review
  10. Article
  11. Article
  12. Article
  13. Review
  14. Update of the Pyrrolysyl-tRNA Synthetase/tRNAJournal of bacteriology · 2023
    Review
  15. Article
  16. Research progress of pathway and genome evolution in microbes.Synthetic and systems biotechnology · 2022
    Article
  17. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Joanne M L Ho *Department of Biosciences, Rice University, Houston, TX, USA.ORCID 0000-0002-5512-6992
Corwin A Miller *Department of Biosciences, Rice University, Houston, TX, USA.
Kathryn A SmithDepartment of Biosciences, Rice University, Houston, TX, USA.ORCID 0000-0001-9006-2931
Jacob R MattiaDepartment of Biosciences, Rice University, Houston, TX, USA.
Matthew R BennettDepartment of Biosciences, Rice University, Houston, TX, USA. matthew.bennett@rice.edu.ORCID 0000-0002-4975-8854
Rice University · US

Funding

Expanding the utility of transcriptional bacterial computingR01GM117138 · NIGMS · RICE UNIVERSITY · PI BENNETT, MATTHEW R., JOSIC, KRESIMIR · 2016 to 2019
$2.0M
Experimental and mathematical analysis of delay in transcripitional signalingR01GM104974 · NIGMS · RICE UNIVERSITY · PI BENNETT, MATTHEW R. · 2012 to 2016
$1.4M
NIGMS NIH HHS R01 GM104974NIGMS NIH HHS R01 GM117138
6 · The paper itself

Abstract

Pyrrolysine (Pyl, O) exists in nature as the 22

Indexed as

Bacterial ProteinsBiosynthetic PathwaysColiphagesDirected Molecular EvolutionEscherichia coliGreen Fluorescent ProteinsLysineMicroorganisms, Genetically-ModifiedMutationOperonRecombinant ProteinsRNA, TransferSolubilityBacterial ProteinsGreen Fluorescent ProteinsLysinepyrrolysineRecombinant ProteinsRNA, Transfer

Identifiers

PMID34168131
PMCPMC8225853
OpenAlexW3173606249

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.