Evidence map›Paper›PMID 34167489›Full record

ArticleBMC plant biology2021

PEPC of sugarcane regulated glutathione S-transferase and altered carbon-nitrogen metabolism under different N source concentrations in Oryza sativa.

Ling Lian, Yuelong Lin, Yidong Wei, Wei He, Qiuhua Cai, Wei Huang, Yanmei Zheng, Huibin Xu, Fuxiang Wang, Yongsheng Zhu and 3 more

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed, 1 pooled it
4.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 1 synthesis or guideline pooled it, 30 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Silencing of SbPlants (Basel, Switzerland) · 2023
    Article
  6. Article
  7. Article
  8. Review
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 2 institutions in 1 country.

Ling LianRice Research Institute, Fujian Academy of Agricultural Sciences, 350019, Fuzhou, Fujian, China.
Yuelong LinRice Research Institute, Fujian Academy of Agricultural Sciences, 350019, Fuzhou, Fujian, China.
Yidong WeiRice Research Institute, Fujian Academy of Agricultural Sciences, 350019, Fuzhou, Fujian, China.
Wei HeRice Research Institute, Fujian Academy of Agricultural Sciences, 350019, Fuzhou, Fujian, China.
Qiuhua CaiRice Research Institute, Fujian Academy of Agricultural Sciences, 350019, Fuzhou, Fujian, China.
Wei HuangInstitute of Quality Standards & Testing Technology for Agro-Products, Fujian Academy of Agricultural Sciences, 350003, Fuzhou, Fujian, China.
Yanmei ZhengRice Research Institute, Fujian Academy of Agricultural Sciences, 350019, Fuzhou, Fujian, China.
Huibin XuRice Research Institute, Fujian Academy of Agricultural Sciences, 350019, Fuzhou, Fujian, China.
Fuxiang WangRice Research Institute, Fujian Academy of Agricultural Sciences, 350019, Fuzhou, Fujian, China.
Yongsheng ZhuRice Research Institute, Fujian Academy of Agricultural Sciences, 350019, Fuzhou, Fujian, China.
Xi LuoRice Research Institute, Fujian Academy of Agricultural Sciences, 350019, Fuzhou, Fujian, China.
Huaan XieRice Research Institute, Fujian Academy of Agricultural Sciences, 350019, Fuzhou, Fujian, China.
Jianfu ZhangRice Research Institute, Fujian Academy of Agricultural Sciences, 350019, Fuzhou, Fujian, China. jianfzhang@163.com.
Rice Research Institute · CNFujian Academy of Agricultural Sciences · CN

Funding

the Cultivation Project for National Natural Science Foundation of Fujian Academy of Agricultural Sciences GJPY2019005the National Key Research and Development Program of China 2017YFD0100100the Open Research Fund of State Key Laboratory of Hybrid Rice (Hunan Hybrid Rice Research Center) 2019KF10
6 · The paper itself

Abstract

backgroundPhosphoenolpyruvate carboxylase (PEPC) plays an important role in the primary metabolism of higher plants. Several studies have revealed the critical importance of PEPC in the interaction of carbon and nitrogen metabolism. However, the function mechanism of PEPC in nitrogen metabolism is unclear and needs further investigation.

resultsThis study indicates that transgenic rice expressing the sugarcane C4-PEPC gene displayed shorter primary roots and fewer crown roots at the seedling stage. However, total nitrogen content was significantly higher in transgenic rice than in wild type (WT) plants. Proteomic analysis revealed that there were more differentially expressed proteins (DEPs) responding to nitrogen changes in transgenic rice. In particular, the most enriched pathway "glutathione (GSH) metabolism", which mainly contains GSH S-transferase (GST), was identified in transgenic rice. The expression of endogenous PEPC, GST and several genes involved in the TCA cycle, glycolysis and nitrogen assimilation changed in transgenic rice. Correspondingly, the activity of enzymes including GST, citrate synthase, 6-phosphofructokinase, pyruvate kinase and ferredoxin-dependent glutamate synthase significantly changed. In addition, the levels of organic acids in the TCA cycle and carbohydrates including sucrose, starch and soluble sugar altered in transgenic rice under different nitrogen source concentrations. GSH that the substrate of GST and its components including glutamic acid, cysteine and glycine accumulated in transgenic rice. Moreover, the levels of phytohormones including indoleacetic acid (IAA), zeatin (ZT) and isopentenyladenosine (2ip) were lower in the roots of transgenic rice under total nutrients. Taken together, the phenotype, physiological and biochemical characteristics of transgenic rice expressing C

conclusionsOur results revealed the possibility that PEPC affects nitrogen metabolism through regulating GST, which provide a new direction and concepts for the further study of the PEPC functional mechanism in nitrogen metabolism.

Indexed as

CarbonGlutathione TransferaseNitrogenOryzaPhosphoenolpyruvate CarboxylasePlants, Genetically ModifiedProteomicsSaccharumTranscriptomeCarbonGlutathione TransferaseNitrogenPhosphoenolpyruvate CarboxylaseEnzyme activityGene expressionNitrogen-carbohydrate metabolismPEPCPhytohormone contentProteomic analysis

Identifiers

PMID34167489
PMCPMC8223297
OpenAlexW3174045807

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.