Evidence map›Paper›PMID 34167357›Full record

ArticleSLAS technology2021

Optimal Scheduling for Laboratory Automation of Life Science Experiments with Time Constraints.

Takeshi D Itoh, Takaaki Horinouchi, Hiroki Uchida, Koichi Takahashi, Haruka Ozaki

Abstract read
In one paragraph

Article in SLAS technology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Takeshi D ItohMathematical Informatics Laboratory, Graduate School of Science and Technology, Nara Institute of Science and Technology, Ikoma, Nara, Japan.ORCID 0000-0002-4021-1481
Takaaki HorinouchiLaboratory for Biologically Inspired Computing, RIKEN Center for Biosystems Dynamics Research, Suita, Osaka, Japan.
Hiroki UchidaTecan Japan Co., Ltd., Kawasaki, Kanagawa, Japan.
Koichi TakahashiLaboratory for Biologically Inspired Computing, RIKEN Center for Biosystems Dynamics Research, Suita, Osaka, Japan.
Haruka OzakiBioinformatics Laboratory, Faculty of Medicine, University of Tsukuba, Tsukuba, Ibaraki, Japan.ORCID 0000-0002-1606-2762

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In automated laboratories consisting of multiple different types of instruments, scheduling algorithms are useful for determining the optimal allocations of instruments to minimize the time required to complete experimental procedures. However, previous studies on scheduling algorithms for laboratory automation have not emphasized the time constraints by mutual boundaries (TCMBs) among operations, which is important in procedures involving live cells or unstable biomolecules. Here, we define the "scheduling for laboratory automation in biology" (S-LAB) problem as a scheduling problem for automated laboratories in which operations with TCMBs are performed by multiple different instruments. We formulate an S-LAB problem as a mixed-integer programming (MIP) problem and propose a scheduling method using the branch-and-bound algorithm. Simulations show that our method can find the optimal schedules of S-LAB problems that minimize overall execution time while satisfying the TCMBs. Furthermore, we propose the use of our scheduling method for the simulation-based design of job definitions and laboratory configurations.

Indexed as

Automation, LaboratoryBiological Science DisciplinesAlgorithmsComputer SimulationLaboratoriesbranch-and-bound algorithmlaboratory automation (LA)schedulingtime constraint by mutual boundaries (TCMB)

Identifiers

PMID34167357
PMCPMC8641030

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.