Evidence map›Paper›PMID 34166600›Full record

ArticleAmerican journal of respiratory cell and molecular biology2021

Connecting COPD GWAS Genes: FAM13A Controls TGFβ2 Secretion by Modulating AP-3 Transport.

Lu Gong, Samuel Bates, Jian Li, Dandi Qiao, Kimberly Glass, Wenyi Wei, Victor W Hsu, Xiaobo Zhou, Edwin K Silverman

Open access · greenAbstract read
In one paragraph

Article in American journal of respiratory cell and molecular biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.3field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Long isoforms of the COPD risk gene FAM13A orchestrate human lung epithelial development.American journal of respiratory cell and molecular biology · 2026
    Article
  3. Review
  4. Review
  5. Article
  6. The FAM13A Long Isoform Regulates Cilia Movement and Coordination in Airway Mucociliary Transport.American journal of respiratory cell and molecular biology · 2024
    Article
  7. Article
  8. AKT Phosphorylates FAM13A and Promotes Its Degradation via CUL4A/DDB1/DCAF1 E3 Complex.American journal of respiratory cell and molecular biology · 2023
    Article
  9. Article
  10. Connecting GWAS Susceptibility Genes in COPD: Do We Need to Consider TGF-β2?American journal of respiratory cell and molecular biology · 2021
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Lu GongChanning Division of Network Medicine, and.
Samuel BatesChanning Division of Network Medicine, and.
Jian LiDivision of Rheumatology, Inflammation and Immunity, Brigham and Women's Hospital, Boston, Massachusetts.
Dandi QiaoChanning Division of Network Medicine, and.
Kimberly GlassChanning Division of Network Medicine, and.
Wenyi WeiHarvard Medical School, Harvard University, Boston, Massachusetts; and.
Victor W HsuDivision of Rheumatology, Inflammation and Immunity, Brigham and Women's Hospital, Boston, Massachusetts.ORCID 0000-0002-6763-4636
Xiaobo ZhouChanning Division of Network Medicine, and.ORCID 0000-0002-7127-2869
Edwin K SilvermanChanning Division of Network Medicine, and.ORCID 0000-0002-3641-3822
Harvard University · USBrigham and Women's Hospital · USBeth Israel Deaconess Medical Center · US

Funding

Respiratory Computational Discovery CoreP01HL114501 · NHLBI · WEILL MEDICAL COLL OF CORNELL UNIV · PI CHOI, MARY E · 2013 to 2025
$24.9M
COPD Susceptibility, Heterogeneity, and Progression: Proteomics and GeneticsR01HL133135 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI MORITZ, ROBERT L, SILVERMAN, EDWIN K · 2017 to 2025
$7.2M
Mechanisms and Physiology of COPI TransportR37GM058615 · NIGMS · BRIGHAM AND WOMEN'S HOSPITAL · PI HSU, VICTOR W · 2016 to 2025
$6.0M
Metabolic Control of Stemness in lung epithelial progenitors by FAM13AR01HL127200 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI ZHOU, ANNY XIAOBO · 2015 to 2024
$4.9M
Genetic and Functional Dissection of a Cluster of COPD GWAS Signals on Chromosome 4qR01HL147148 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI CHO, MICHAEL H., SILVERMAN, EDWIN K · 2019 to 2022
$3.5M
Identifying functional variants in COPD GWAS lociR01HL137927 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI CHO, MICHAEL H., SILVERMAN, EDWIN K · 2017 to 2020
$3.5M
Using Integrative Networks to Explore Heterogeneous Phenotypes in COPDK25HL133599 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI GLASS, KIMBERLY RENEE · 2016 to 2020
$945k
Network-based Methods for Understanding Genetic Determinants and Epistasis in COPDK01HL129039 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI QIAO, DANDI · 2015 to 2019
$844k
NHLBI NIH HHS K01 HL129039NHLBI NIH HHS K25 HL133599NHLBI NIH HHS P01 HL114501NHLBI NIH HHS R01 HL127200NHLBI NIH HHS R01 HL133135NHLBI NIH HHS R01 HL137927NHLBI NIH HHS R01 HL147148NIGMS NIH HHS R37 GM058615
6 · The paper itself

Abstract

Chronic obstructive pulmonary disease (COPD) is a common, complex disease and a major cause of morbidity and mortality. Although multiple genetic determinants of COPD have been implicated by genome-wide association studies (GWASs), the pathophysiological significance of these associations remains largely unknown. From a COPD protein-protein interaction network module, we selected a network path between two COPD GWAS genes for validation studies: FAM13A (family with sequence similarity 13 member A)-AP3D1-CTGF- TGFβ2. We find that TGFβ2, FAM13A, and AP3D1 (but not CTGF) form a cellular protein complex. Functional characterization suggests that this complex mediates the secretion of TGFβ2 through an AP-3 (adaptor protein 3)-dependent pathway, with FAM13A acting as a negative regulator by targeting a late stage of this transport that involves the dissociation of coat-cargo interaction. Moreover, we find that TGFβ2 is a transmembrane protein that engages the AP-3 complex for delivery to the late endosomal compartments for subsequent secretion through exosomes. These results identify a pathophysiological context that unifies the biological network role of two COPD GWAS proteins and reveal novel mechanisms of cargo transport through an intracellular pathway.

Indexed as

Adaptor Protein Complex 3Adaptor Protein Complex delta SubunitsCell LineExosomesGenome-Wide Association StudyGTPase-Activating ProteinsHEK293 CellsHumansProtein Interaction MapsProtein TransportPulmonary Disease, Chronic ObstructiveReproducibility of ResultsTransforming Growth Factor beta2Adaptor Protein Complex 3Adaptor Protein Complex delta SubunitsAP3D1 protein, humanFAM13A protein, humanGTPase-Activating ProteinsTransforming Growth Factor beta2cell traffickingchronic obstructive pulmonary diseasegenome-wide association studynetwork medicinenetwork validation

Identifiers

PMID34166600
PMCPMC8641846
OpenAlexW3176645361

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.