Evidence map›Paper›PMID 34166371›Full record

ArticlePLoS genetics2021

Tet1 regulates epigenetic remodeling of the pericentromeric heterochromatin and chromocenter organization in DNA hypomethylated cells.

Yota Hagihara, Satoshi Asada, Takahiro Maeda, Toru Nakano, Shinpei Yamaguchi

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.7field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. DNMT1 can induce primary germ layer differentiation through de novo DNA methylation.Genes to cells : devoted to molecular & cellular mechanisms · 2024
    Article
  5. Article
  6. Article
  7. Review
  8. Review
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Yota HagiharaGraduate School of Frontier Biosciences, Osaka University, Suita, Osaka, Japan.ORCID 0000-0002-6338-6348
Satoshi AsadaGraduate School of Frontier Biosciences, Osaka University, Suita, Osaka, Japan.
Takahiro MaedaGraduate School of Frontier Biosciences, Osaka University, Suita, Osaka, Japan.
Toru NakanoGraduate School of Frontier Biosciences, Osaka University, Suita, Osaka, Japan.
Shinpei YamaguchiGraduate School of Medicine, Osaka University, Suita, Osaka, Japan.ORCID 0000-0002-9377-4835
The University of Osaka · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Pericentromeric heterochromatin (PCH), the constitutive heterochromatin of pericentromeric regions, plays crucial roles in various cellular events, such as cell division and DNA replication. PCH forms chromocenters in the interphase nucleus, and chromocenters cluster at the prophase of meiosis. Chromocenter clustering has been reported to be critical for the appropriate progression of meiosis. However, the molecular mechanisms underlying chromocenter clustering remain elusive. In this study, we found that global DNA hypomethylation, 5hmC enrichment in PCH, and chromocenter clustering of Dnmt1-KO ESCs were similar to those of the female meiotic germ cells. Tet1 is essential for the deposition of 5hmC and facultative histone marks of H3K27me3 and H2AK119ub at PCH, as well as chromocenter clustering. RING1B, one of the core components of PRC1, is recruited to PCH by TET1, and PRC1 plays a critical role in chromocenter clustering. In addition, the rearrangement of the chromocenter under DNA hypomethylated condition was mediated by liquid-liquid phase separation. Thus, we demonstrated a novel role of Tet1 in chromocenter rearrangement in DNA hypomethylated cells.

Indexed as

Epigenesis, Genetic5-MethylcytosineAnimalsCell LineCentromereDNADNA-Binding ProteinsDNA (Cytosine-5-)-Methyltransferase 1DNA MethylationFemaleHeterochromatinHistonesMeiosisMiceMouse Embryonic Stem CellsOvum5-hydroxymethylcytosine5-MethylcytosineDNADNA-Binding ProteinsDNA (Cytosine-5-)-Methyltransferase 1Dnmt1 protein, mouseHeterochromatinHistonesPolycomb Repressive Complex 1Protein IsoformsProto-Oncogene ProteinsRnf2 protein, mouseTET1 protein, mouseUbiquitin-Protein Ligases

Identifiers

PMID34166371
PMCPMC8263065
OpenAlexW3174750438

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.