Article in PLoS computational biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.
0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
2 · The registry
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
5 · Who and what money
Authors and funding
31 authors.
Matthew R DillonCenter for Applied Microbiome Science, Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, Arizona, United States of America.ORCID 0000-0002-7713-1952
Evan BolyenCenter for Applied Microbiome Science, Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, Arizona, United States of America.ORCID 0000-0002-5362-6782
Anja AdamovLaboratory of Food Systems Biotechnology, Institute of Food, Nutrition, and Health, ETH Zürich, Zürich, Switzerland.ORCID 0000-0002-7506-1583
Aeriel BelkDepartment of Animal Sciences, Cell and Molecular Biology Special Academic Unit, Colorado State University, Fort Collins, Colorado, United States of America.ORCID 0000-0001-9925-6986
Emily BorsomCenter for Applied Microbiome Science, Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, Arizona, United States of America.ORCID 0000-0001-6379-2517
Zachary BurchamDepartment of Animal Sciences, Cell and Molecular Biology Special Academic Unit, Colorado State University, Fort Collins, Colorado, United States of America.
Justine W DebeliusCentre for Translational Microbiome Research, Department of Microbiology, Tumor, and Cancer Biology, Karolinska Institutet, Stockholm, Sweden.ORCID 0000-0002-8605-3546
Heather DeelDepartment of Animal Sciences, Cell and Molecular Biology Special Academic Unit, Colorado State University, Fort Collins, Colorado, United States of America.ORCID 0000-0002-9429-9052
Alex EmmonsDepartment of Animal Sciences, Cell and Molecular Biology Special Academic Unit, Colorado State University, Fort Collins, Colorado, United States of America.ORCID 0000-0002-5637-105X
Mehrbod EstakiDepartment of Pediatrics, University of California San Diego, San Diego, California, United States of America.ORCID 0000-0003-4556-8444
Chloe HermanCenter for Applied Microbiome Science, Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, Arizona, United States of America.ORCID 0000-0003-2479-9710
Christopher R KeefeCenter for Applied Microbiome Science, Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, Arizona, United States of America.ORCID 0000-0002-4289-0991
Jamie T MortonCenter for Computational Biology, Flatiron Institute, Simons Foundation, New York, New York, United States of America.
Renato R M OliveiraEnvironmental Genomics, Instituto Tecnológico Vale, Belém, Pará, Brazil.ORCID 0000-0002-0111-8209
Andrew SanchezCenter for Applied Microbiome Science, Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, Arizona, United States of America.ORCID 0000-0002-4914-1360
Anthony SimardCenter for Applied Microbiome Science, Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, Arizona, United States of America.ORCID 0000-0002-7394-1616
Yoshiki Vázquez-BaezaCenter for Microbiome Innovation, Jacobs School of Engineering, University of California San Diego, San Diego, California, United States of America.ORCID 0000-0001-6014-2009
Michal ZiemskiLaboratory of Food Systems Biotechnology, Institute of Food, Nutrition, and Health, ETH Zürich, Zürich, Switzerland.ORCID 0000-0001-6285-8852
Hazuki E MiwaAcademic Programs, Foundation for Advanced Education in the Sciences at the National Institutes of Health, Bethesda, Maryland, United States of America.
Terry A KerereAcademic Programs, Foundation for Advanced Education in the Sciences at the National Institutes of Health, Bethesda, Maryland, United States of America.
Carline CooteAcademic Programs, Foundation for Advanced Education in the Sciences at the National Institutes of Health, Bethesda, Maryland, United States of America.
Richard BonneauCenter for Computational Biology, Flatiron Institute, Simons Foundation, New York, New York, United States of America.ORCID 0000-0003-4354-7906
Rob KnightDepartment of Pediatrics, University of California San Diego, San Diego, California, United States of America.ORCID 0000-0002-0975-9019
Guilherme OliveiraEnvironmental Genomics, Instituto Tecnológico Vale, Belém, Pará, Brazil.ORCID 0000-0003-0054-3438
Piraveen GopalasingamEuropean Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Hinxton, Cambridgeshire, United Kingdom.ORCID 0000-0001-5709-3373
Benjamin D KaehlerSchool of Science, University of New South Wales, Canberra, Australia.ORCID 0000-0002-5318-9551
Emily K CopeCenter for Applied Microbiome Science, Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, Arizona, United States of America.ORCID 0000-0002-9631-2791
Jessica L MetcalfDepartment of Animal Sciences, Cell and Molecular Biology Special Academic Unit, Colorado State University, Fort Collins, Colorado, United States of America.ORCID 0000-0001-8374-8046
Michael S Robeson IiDepartment of Biomedical Informatics, College of Medicine, University of Arkansas for Medical Sciences, Little Rock, Arkansas, United States of America.ORCID 0000-0001-7119-6301
Nicholas A BokulichLaboratory of Food Systems Biotechnology, Institute of Food, Nutrition, and Health, ETH Zürich, Zürich, Switzerland.
J Gregory CaporasoCenter for Applied Microbiome Science, Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, Arizona, United States of America.ORCID 0000-0002-8865-1670
Funding
Training/Career Development and Education Core and PlansU54CA143925 · NCI · NORTHERN ARIZONA UNIVERSITY · PI Jason A Wilder · 2009 to 2026
$27.5M
Advanced Development of Informatics Technologies for Cancer Research and Management (U24 Clinical Trial Optional)U24CA248454 · NCI · NORTHERN ARIZONA UNIVERSITY · PI CAPORASO, JAMES GREGORY · 2020 to 2024
$3.7M
Biotechnology and Biological Sciences Research Council BB/P027849/1NCI NIH HHS U24 CA248454NCI NIH HHS U54 CA143925NIH HHS 1U24CA248454-01
6 · The paper itself
Abstract
In October of 2020, in response to the Coronavirus Disease 2019 (COVID-19) pandemic, our team hosted our first fully online workshop teaching the QIIME 2 microbiome bioinformatics platform. We had 75 enrolled participants who joined from at least 25 different countries on 6 continents, and we had 22 instructors on 4 continents. In the 5-day workshop, participants worked hands-on with a cloud-based shared compute cluster that we deployed for this course. The event was well received, and participants provided feedback and suggestions in a postworkshop questionnaire. In January of 2021, we followed this workshop with a second fully online workshop, incorporating lessons from the first. Here, we present details on the technology and protocols that we used to run these workshops, focusing on the first workshop and then introducing changes made for the second workshop. We discuss what worked well, what didn't work well, and what we plan to do differently in future workshops.
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.
Experiences and lessons learned from two virtual, hands-on microbiome bioinformatics workshops. · full record | OpenQuestion