Evidence map›Paper›PMID 34165718›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2021

Pseudogenes: A Novel Source of Trans-Acting Antisense RNAs.

Nicholas C Lister, Per Johnsson, Paul D Waters, Kevin V Morris

Abstract read
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In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Review
  3. Cancers · 2023
    Review
  4. Review
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Nicholas C ListerSchool of Biotechnology and Biomedical Sciences, The University of New South Wales, Sydney, NSW, Australia. n.lister@unsw.edu.au.
Per JohnssonDepartment of Cell and Molecular Biology, Karolinska Institutet, Stockholm, Sweden.
Paul D WatersSchool of Biotechnology and Biomedical Sciences, The University of New South Wales, Sydney, NSW, Australia.
Kevin V MorrisMenzies Health Institute and School of Pharmacology and Medical Sciences, Griffith University, Southport, QLD, Australia.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Several recent studies support a functional role for pseudogenes, a copy of a parent gene that has lost protein-coding potential, which was for a long time thought to represent only "junk" DNA. Several hundreds of pseudogenes have now been reported as transcribed RNAs in a large variety of tissues and tumor types. Most studies have focused on pseudogenes expressed in sense direction, relative to their protein-coding gene counterpart, but some reports suggest that pseudogenes can be also transcribed as antisense RNAs (asRNAs). Key regulatory genes, such as PTEN and OCT4, have in fact been reported to be under the regulation of pseudogene-expressed asRNAs. Here, we review what is known about pseudogene-expressed asRNAs, we discuss the functional role that these transcripts may have in gene regulation and we summarize the techniques that are available to study them.

Indexed as

AnimalsChromatin ImmunoprecipitationGene Expression RegulationGene Knockdown TechniquesGenome-Wide Association StudyHumansLymnaeaNitric Oxide Synthase Type IOctamer Transcription Factor-3PseudogenesPTEN PhosphohydrolaseRNA, AntisenseRNA StabilityRNA, UntranslatedTranscription, GeneticNitric Oxide Synthase Type IOctamer Transcription Factor-3PTEN PhosphohydrolaseRNA, AntisenseRNA, UntranslatedAntisense RNADNMT3AEpigeneticsEZH2Non-coding RNAPseudogeneRNA stabilityTranscriptional regulation

Identifiers

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.