Evidence map›Paper›PMID 34165715›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2021

Studying the Oncosuppressive Functions of PTENP1 as a ceRNA.

Glena Travis, Nahal Haddadi, Ann M Simpson, Deborah J Marsh, Eileen M McGowan, Najah T Nassif

Abstract read
PubMed Publisher
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
1.0field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 2 citations in OpenAlex.

  1. Bioinformatic Tools for the Analysis and Prediction of ncRNA Interactions.International journal of molecular sciences · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Glena TravisSchool of Life Sciences, Faculty of Science, University of Technology Sydney, Ultimo, NSW, Australia.
Nahal HaddadiSchool of Life Sciences, Faculty of Science, University of Technology Sydney, Ultimo, NSW, Australia.
Ann M SimpsonSchool of Life Sciences, Faculty of Science, University of Technology Sydney, Ultimo, NSW, Australia.
Deborah J MarshSchool of Life Sciences, Faculty of Science, University of Technology Sydney, Ultimo, NSW, Australia.
Eileen M McGowanSchool of Life Sciences, Faculty of Science, University of Technology Sydney, Ultimo, NSW, Australia.
Najah T NassifSchool of Life Sciences, Faculty of Science, University of Technology Sydney, Ultimo, NSW, Australia. Najah.Nassif@uts.edu.au.
University of Technology Sydney · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

PTENP1 is a processed pseudogene of the tumour suppressor phosphatase and tensin homolog deleted on chromosome 10 (PTEN). It functions posttranscriptionally to regulate PTEN by acting as a sponge for microRNAs that target PTEN. PTENP1 therefore functions as a competitive endogenous RNA (ceRNA), competing with PTEN for binding of microRNAs (miRNA) and thereby modulating PTEN cellular abundance. Studies of the overexpression of PTENP1 all confirm its oncosuppressive function to be mediated through the suppression of cell proliferation, induction of apoptosis, and inhibition of cell migration and invasion of cancer cells of differing types. These oncosuppressive functions are a direct consequence of miRNA binding by PTENP1 and the subsequent liberation of PTEN from miRNA induced suppression. In this chapter, we will focus initially on the description of a high efficiency transient transfection method to introduce and overexpress PTENP1 in the cell type of interest, followed by accurate methodologies to measure transfection efficiency by flow cytometry. We will then continue to describe two methods to analyze cell proliferation, namely the CCK-8 assay and Click-iT

Indexed as

Pseudogenes3' Untranslated RegionsAnimalsBinding, CompetitiveCell CountCell DivisionCell Line, TumorCloning, MolecularColorimetryDNA ReplicationFlow CytometryFluorescent DyesHumansMicroRNAsMicroscopy, FluorescencePlasmids3' Untranslated RegionsFluorescent DyesMicroRNAsPTEN PhosphohydrolasePTEN protein, humanTumor Suppressor ProteinsCell proliferationceRNAOverexpressionPseudogenePTENPTENP1

Identifiers

PMID34165715
OpenAlexW3175731279

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.