Evidence map›Paper›PMID 34164769›Full record

ArticleJournal of computer-aided molecular design2021

SAMPL7 blind challenge: quantum-mechanical prediction of partition coefficients and acid dissociation constants for small drug-like molecules.

Basak Koca Fındık, Zeynep Pinar Haslak, Evrim Arslan, Viktorya Aviyente

Abstract read
PubMed Publisher
In one paragraph

Article in Journal of computer-aided molecular design, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Host Dynamics under General-Purpose Force Fields.Molecules (Basel, Switzerland) · 2023
    Article
  2. Article
  3. Evaluation of log P, pKJournal of computer-aided molecular design · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Basak Koca Fındık *Department of Chemistry, Bogazici University, 34342, Bebek/Istanbul, Turkey.ORCID http://orcid.org/0000-0002-5213-9712
Zeynep Pinar Haslak *Department of Chemistry, Bogazici University, 34342, Bebek/Istanbul, Turkey.ORCID http://orcid.org/0000-0002-2850-9816
Evrim Arslan *Department of Chemistry, Bogazici University, 34342, Bebek/Istanbul, Turkey.ORCID http://orcid.org/0000-0002-0449-0030
Viktorya AviyenteDepartment of Chemistry, Bogazici University, 34342, Bebek/Istanbul, Turkey. aviye@boun.edu.tr.ORCID http://orcid.org/0000-0001-9430-4096

Funding

Advancing predictive physical modeling through focused development of model systems to drive new modeling innovationsR01GM124270 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI MOBLEY, DAVID LOWELL · 2018 to 2021
$1.5M
NIGMS NIH HHS R01 GM124270
6 · The paper itself

Abstract

The physicochemical properties of a drug molecule determine the therapeutic effectiveness of the drug. Thus, the development of fast and accurate theoretical approaches for the prediction of such properties is inevitable. The participation to the SAMPL7 challenge is based on the estimation of logP coefficients and pK

Indexed as

EntropyQuantum Theory1-OctanolHumansModels, ChemicalMolecular StructurePharmaceutical PreparationsSolubilitySolventsSulfonamidesThermodynamicsWater1-OctanolPharmaceutical PreparationsSolventsSulfonamidesWaterComputer-aided drug designDFTLogPpK aSAMPL7Solvation free energies

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.