Evidence map›Paper›PMID 34162989›Full record

ArticleScientific reports2021

Integrated network analysis identifying potential novel drug candidates and targets for Parkinson's disease.

Pusheng Quan, Kai Wang, Shi Yan, Shirong Wen, Chengqun Wei, Xinyu Zhang, Jingwei Cao, Lifen Yao

Abstract read
In one paragraph

Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

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  10. Construction and contextualization approaches for protein-protein interaction networks.Computational and structural biotechnology journal · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Pusheng QuanDepartment of Neurology, The First Affiliated Hospital, Harbin Medical University, Harbin, 150081, China.
Kai WangCenter of TOF-PET/CT/MR, The Fourth Affiliated Hospital, Harbin Medical University, Harbin, 150081, China.
Shi YanDepartment of Neurology, The First Affiliated Hospital, Harbin Medical University, Harbin, 150081, China.
Shirong WenDepartment of Neurology, The First Affiliated Hospital, Harbin Medical University, Harbin, 150081, China.
Chengqun WeiDepartment of General Practice, Heilongjiang Provincial Hospital, Harbin, 150081, China.
Xinyu ZhangDepartment of Neurology, The First Affiliated Hospital, Harbin Medical University, Harbin, 150081, China.
Jingwei CaoDepartment of Neurology, The First Affiliated Hospital, Harbin Medical University, Harbin, 150081, China.
Lifen YaoDepartment of Neurology, The First Affiliated Hospital, Harbin Medical University, Harbin, 150081, China. yaolf@hrbmu.edu.cn.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

This study aimed to identify potential novel drug candidates and targets for Parkinson's disease. First, 970 genes that have been reported to be related to PD were collected from five databases, and functional enrichment analysis of these genes was conducted to investigate their potential mechanisms. Then, we collected drugs and related targets from DrugBank, narrowed the list by proximity scores and Inverted Gene Set Enrichment analysis of drug targets, and identified potential drug candidates for PD treatment. Finally, we compared the expression distribution of the candidate drug-target genes between the PD group and the control group in the public dataset with the largest sample size (GSE99039) in Gene Expression Omnibus. Ten drugs with an FDR < 0.1 and their corresponding targets were identified. Some target genes of the ten drugs significantly overlapped with PD-related genes or already known therapeutic targets for PD. Nine differentially expressed drug-target genes with p < 0.05 were screened. This work will facilitate further research into the possible efficacy of new drugs for PD and will provide valuable clues for drug design.

Indexed as

Drug DiscoveryMolecular Targeted TherapyAntiparkinson AgentsCell LineDatabases, GeneticDatabases, PharmaceuticalData MiningDrug Evaluation, PreclinicalElectron TransportEnergy MetabolismGene ExpressionGene OntologyHumansIon TransportMetabolic Networks and PathwaysNeurodegenerative DiseasesAntiparkinson Agents

Identifiers

PMID34162989
PMCPMC8222400

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.