Evidence map›Paper›PMID 34162975›Full record

ArticleScientific reports2021

A new non-classical fold of varroa odorant-binding proteins reveals a wide open internal cavity.

Beatrice Amigues, Jiao Zhu, Anais Gaubert, Simona Arena, Giovanni Renzone, Philippe Leone, Isabella Maria Fischer, Harald Paulsen, Wolfgang Knoll, Andrea Scaloni and 3 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.0field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. The Odorant-Binding Proteins of the Spider MiteInternational journal of molecular sciences · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 7 institutions in 4 countries.

Beatrice Amigues *Architecture et Fonction des Macromolécules Biologiques (AFMB, UMR 6098), Centre National de la Recherche Scientifique (CNRS), Aix-Marseille Université (AMU), Campus de Luminy, Case 932, 13288, Marseille Cedex 09, France.
Jiao Zhu *Biosensor Technologies, Austrian Institute of Technology GmbH, Konrad-Lorenz Straße, 24, 3430, Tulln, Austria.
Anais GaubertArchitecture et Fonction des Macromolécules Biologiques (AFMB, UMR 6098), Centre National de la Recherche Scientifique (CNRS), Aix-Marseille Université (AMU), Campus de Luminy, Case 932, 13288, Marseille Cedex 09, France.
Simona ArenaProteomics and Mass Spectrometry Laboratory, ISPAAM, National Research Council, 80147, Naples, Italy.
Giovanni RenzoneProteomics and Mass Spectrometry Laboratory, ISPAAM, National Research Council, 80147, Naples, Italy.
Philippe LeoneArchitecture et Fonction des Macromolécules Biologiques (AFMB, UMR 6098), Centre National de la Recherche Scientifique (CNRS), Aix-Marseille Université (AMU), Campus de Luminy, Case 932, 13288, Marseille Cedex 09, France.
Isabella Maria FischerBiosensor Technologies, Austrian Institute of Technology GmbH, Konrad-Lorenz Straße, 24, 3430, Tulln, Austria.
Harald PaulsenFaculty of Biology, Institute of Molecular Physiology, Johannes Gutenberg-Universität Mainz, 55099, Mainz, Germany.
Wolfgang KnollBiosensor Technologies, Austrian Institute of Technology GmbH, Konrad-Lorenz Straße, 24, 3430, Tulln, Austria.
Andrea ScaloniProteomics and Mass Spectrometry Laboratory, ISPAAM, National Research Council, 80147, Naples, Italy.
Alain RousselArchitecture et Fonction des Macromolécules Biologiques (AFMB, UMR 6098), Centre National de la Recherche Scientifique (CNRS), Aix-Marseille Université (AMU), Campus de Luminy, Case 932, 13288, Marseille Cedex 09, France.
Christian CambillauArchitecture et Fonction des Macromolécules Biologiques (AFMB, UMR 6098), Centre National de la Recherche Scientifique (CNRS), Aix-Marseille Université (AMU), Campus de Luminy, Case 932, 13288, Marseille Cedex 09, France. christian.cambillau@univ-amu.fr.
Paolo PelosiBiosensor Technologies, Austrian Institute of Technology GmbH, Konrad-Lorenz Straße, 24, 3430, Tulln, Austria. paolo.pelosi@ait.ac.at.
Centre National de la Recherche Scientifique · FRAix-Marseille Université · FRAustrian Institute of Technology · ATJohannes Gutenberg University Mainz · DENational Research Council · ITDanube Private University · ATIstituto per il Sistema Produzione Animale in Ambiente Mediterraneo · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Odorant-binding proteins (OBPs), as they occur in insects, form a distinct class of proteins that apparently has no closely related representatives in other animals. However, ticks, mites, spiders and millipedes contain genes encoding proteins with sequence similarity to insect OBPs. In this work, we have explored the structure and function of such non-insect OBPs in the mite Varroa destructor, a major pest of honey bee. Varroa OBPs present six cysteines paired into three disulphide bridges, but with positions in the sequence and connections different from those of their insect counterparts. VdesOBP1 structure was determined in two closely related crystal forms and appears to be a monomer. Its structure assembles five α-helices linked by three disulphide bridges, one of them exhibiting a different connection as compared to their insect counterparts. Comparison with classical OBPs reveals that the second of the six α-helices is lacking in VdesOBP1. Ligand-binding experiments revealed molecules able to bind only specific OBPs with a moderate affinity, suggesting that either optimal ligands have still to be identified, or post-translational modifications present in the native proteins may be essential for modulating binding activity, or else these OBPs might represent a failed attempt in evolution and are not used by the mites.

Indexed as

Amino Acid SequenceAnimalsBinding SitesConserved SequenceCrystallography, X-RayCysteineFluorescent DyesInsect ProteinsKineticsLigandsModels, MolecularPhylogenyProtein BindingProtein ConformationProtein FoldingReceptors, OdorantCysteineFluorescent DyesInsect ProteinsLigandsodorant-binding proteinReceptors, Odorant

Identifiers

PMID34162975
PMCPMC8222343
OpenAlexW3173170165

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.