Evidence map›Paper›PMID 34162407›Full record

ArticleBMC research notes2021

The brain transcriptome of the wolf spider, Schizocosa ocreata.

Daniel Stribling, Peter L Chang, Justin E Dalton, Christopher A Conow, Malcolm Rosenthal, Eileen Hebets, Rita M Graze, Michelle N Arbeitman

Open access · goldAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in BMC research notes, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.2field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 1 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Daniel Stribling *Biomedical Sciences Department, College of Medicine, Florida State University, Tallahassee, FL, 32306, USA.ORCID http://orcid.org/0000-0002-0649-9506
Peter L Chang *Department of Biological Sciences, University of Southern California, Los Angeles, CA, 90089, USA.ORCID http://orcid.org/0000-0001-7676-7708
Justin E DaltonBiomedical Sciences Department, College of Medicine, Florida State University, Tallahassee, FL, 32306, USA.
Christopher A ConowDepartment of Biological Sciences, University of Southern California, Los Angeles, CA, 90089, USA.
Malcolm RosenthalSchool of Biological Sciences, University of Nebraska-Lincoln, Lincoln, NE, 68588, USA.ORCID http://orcid.org/0000-0003-1291-1728
Eileen HebetsSchool of Biological Sciences, University of Nebraska-Lincoln, Lincoln, NE, 68588, USA.
Rita M GrazeDepartment of Biological Sciences, Auburn University, Auburn, AL, 36849, USA.ORCID http://orcid.org/0000-0001-9872-109X
Michelle N ArbeitmanBiomedical Sciences Department, College of Medicine, Florida State University, Tallahassee, FL, 32306, USA. michelle.arbeitman@med.fsu.edu.ORCID http://orcid.org/0000-0002-2437-4352
Florida State University · USUniversity of Nebraska–Lincoln · USUniversity of Southern California · USAuburn University · US

Funding

Division of Environmental Biology 1751296Florida State University Start-up Funds
6 · The paper itself

Abstract

objectivesArachnids have fascinating and unique biology, particularly for questions on sex differences and behavior, creating the potential for development of powerful emerging models in this group. Recent advances in genomic techniques have paved the way for a significant increase in the breadth of genomic studies in non-model organisms. One growing area of research is comparative transcriptomics. When phylogenetic relationships to model organisms are known, comparative genomic studies provide context for analysis of homologous genes and pathways. The goal of this study was to lay the groundwork for comparative transcriptomics of sex differences in the brain of wolf spiders, a non-model organism of the pyhlum Euarthropoda, by generating transcriptomes and analyzing gene expression. DATA DESCRIPTION: To examine sex-differential gene expression, short read transcript sequencing and de novo transcriptome assembly were performed. Messenger RNA was isolated from brain tissue of male and female subadult and mature wolf spiders (Schizocosa ocreata). The raw data consist of sequences for the two different life stages in each sex. Computational analyses on these data include de novo transcriptome assembly and differential expression analyses. Sample-specific and combined transcriptomes, gene annotations, and differential expression results are described in this data note and are available from publicly-available databases.

Indexed as

SpidersTranscriptomeAnimalsBrainFemaleGene Expression ProfilingMaleMolecular Sequence AnnotationPhylogenyBrain and central nervous systemDe novo transcriptome assemblyGene expressionSchizocosa ocreataSex biased expressionSex-differential gene expressionSexual dimorphismTranscriptomesWolf spiders

Identifiers

PMID34162407
PMCPMC8220750
OpenAlexW3175335468

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.