Evidence map›Paper›PMID 34161767›Full record

ArticleCell reports2021

A genome-wide library of MADM mice for single-cell genetic mosaic analysis.

Ximena Contreras, Nicole Amberg, Amarbayasgalan Davaatseren, Andi H Hansen, Johanna Sonntag, Lill Andersen, Tina Bernthaler, Carmen Streicher, Anna Heger, Randy L Johnson and 4 more

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
9.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 71 citations in OpenAlex.

  1. Article
  2. Detection of "hidden" mitotic crossovers by long-read DNA sequencing.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  3. Article
  4. Critical role of cell competition in gliomagenesis.bioRxiv : the preprint server for biology · 2026
    Article
  5. Review
  6. Review
  7. Article
  8. Article
  9. Review
  10. In Vivo Clonal Analysis Using MADM with Spatiotemporal Specificity.Methods in molecular biology (Clifton, N.J.) · 2025
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
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  19. Article
  20. Clonal hematopoiesis and bone marrow inflammation.Translational research : the journal of laboratory and clinical medicine · 2023
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 2 countries.

Ximena ContrerasInstitute of Science and Technology Austria, Am Campus 1, 3400 Klosterneuburg, Austria.
Nicole AmbergInstitute of Science and Technology Austria, Am Campus 1, 3400 Klosterneuburg, Austria.
Amarbayasgalan DavaatserenInstitute of Science and Technology Austria, Am Campus 1, 3400 Klosterneuburg, Austria.
Andi H HansenInstitute of Science and Technology Austria, Am Campus 1, 3400 Klosterneuburg, Austria.
Johanna SonntagInstitute of Science and Technology Austria, Am Campus 1, 3400 Klosterneuburg, Austria.
Lill AndersenInstitute of Laboratory Animal Science, University of Veterinary Medicine Vienna, 1210 Vienna, Austria.
Tina BernthalerInstitute of Laboratory Animal Science, University of Veterinary Medicine Vienna, 1210 Vienna, Austria.
Carmen StreicherInstitute of Science and Technology Austria, Am Campus 1, 3400 Klosterneuburg, Austria.
Anna HegerInstitute of Science and Technology Austria, Am Campus 1, 3400 Klosterneuburg, Austria.
Randy L JohnsonDepartment of Biochemistry and Molecular Biology, University of Texas, Houston, TX 77030, USA.
Lindsay A SchwarzHHMI and Department of Biology, Stanford University, Stanford, CA 94305, USA.
Liqun LuoHHMI and Department of Biology, Stanford University, Stanford, CA 94305, USA.
Thomas RülickeInstitute of Laboratory Animal Science, University of Veterinary Medicine Vienna, 1210 Vienna, Austria.
Simon HippenmeyerInstitute of Science and Technology Austria, Am Campus 1, 3400 Klosterneuburg, Austria. Electronic address: simon.hippenmeyer@ist.ac.at.
Institute of Science and Technology Austria · ATUniversity of Veterinary Medicine Vienna · ATStanford University · USUniversity of Houston · US

Funding

Mosaic Analysis with Double Markers in MiceR01NS050835 · NINDS · STANFORD UNIVERSITY · PI LIQUN LUO · 2005 to 2026
$7.3M
Analysis of Clustered Protocadherin Function in Mammalian NeurodevelopmentF32MH096361 · NIMH · STANFORD UNIVERSITY · PI SCHWARZ, LINDSAY A · 2011 to 2014
$156k
NIMH NIH HHS F32 MH096361NINDS NIH HHS R01 NS050835
6 · The paper itself

Abstract

Mosaic analysis with double markers (MADM) offers one approach to visualize and concomitantly manipulate genetically defined cells in mice with single-cell resolution. MADM applications include the analysis of lineage, single-cell morphology and physiology, genomic imprinting phenotypes, and dissection of cell-autonomous gene functions in vivo in health and disease. Yet, MADM can only be applied to <25% of all mouse genes on select chromosomes to date. To overcome this limitation, we generate transgenic mice with knocked-in MADM cassettes near the centromeres of all 19 autosomes and validate their use across organs. With this resource, >96% of the entire mouse genome can now be subjected to single-cell genetic mosaic analysis. Beyond a proof of principle, we apply our MADM library to systematically trace sister chromatid segregation in distinct mitotic cell lineages. We find striking chromosome-specific biases in segregation patterns, reflecting a putative mechanism for the asymmetric segregation of genetic determinants in somatic stem cell division.

Indexed as

Gene LibraryGenomeMosaicismSingle-Cell AnalysisAdenomatous Polyposis ColiAdult Stem CellsAnimalsChromatidsChromosome SegregationChromosomes, MammalianDisease Models, AnimalGenetic MarkersGenomic ImprintingLiverMiceMice, Inbred C57BLGenetic Markersfunctional gene analysisgenetic mosaicgenomic imprintinglineageMosaic Analysis with Double Markers (MADM)single cellsister chromatid Segregation Patternstem cell

Identifiers

PMID34161767
PMCPMC8317686
OpenAlexW3176075012

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.