Evidence map›Paper›PMID 34160888›Full record

ArticlePlant biotechnology journal2021

CRISPR-Cas9 editing of CAFFEOYL SHIKIMATE ESTERASE 1 and 2 shows their importance and partial redundancy in lignification in Populus tremula × P. alba.

Lisanne de Vries, Marlies Brouckaert, Alexandra Chanoca, Hoon Kim, Matthew R Regner, Vitaliy I Timokhin, Yi Sun, Barbara De Meester, Jan Van Doorsselaere, Geert Goeminne and 6 more

Open access · goldAbstract read
In one paragraph

Article in Plant biotechnology journal, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
3.3field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 50 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Mitigating Response ofPlants (Basel, Switzerland) · 2025
    Article
  5. Article
  6. Review
  7. Article
  8. Enhancing monolignol ferulate conjugate levels in poplar lignin via OsFMT1.Biotechnology for biofuels and bioproducts · 2024
    Article
  9. Expression Quantitative Trait Locus of Wood Formation-Related Genes inInternational journal of molecular sciences · 2023
    Article
  10. Article
  11. Article
  12. Review
  13. Review
  14. CRISPR-Based Genome Editing and Its Applications in Woody Plants.International journal of molecular sciences · 2022
    Review
  15. Article
  16. Whole genome duplication of wild-type andFrontiers in plant science · 2022
    Article
  17. Article
  18. Article
  19. CRISPR-Knockout ofInternational journal of molecular sciences · 2021
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 5 institutions in 3 countries.

Lisanne de VriesDepartment of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium.
Marlies BrouckaertDepartment of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium.
Alexandra ChanocaDepartment of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium.
Hoon KimDepartment of Biochemistry, and U.S. Department of Energy Great Lakes Bioenergy Research Center, Wisconsin Energy Institute, University of Wisconsin-Madison, Madison, WI, USA.
Matthew R RegnerDepartment of Biochemistry, and U.S. Department of Energy Great Lakes Bioenergy Research Center, Wisconsin Energy Institute, University of Wisconsin-Madison, Madison, WI, USA.
Vitaliy I TimokhinDepartment of Biochemistry, and U.S. Department of Energy Great Lakes Bioenergy Research Center, Wisconsin Energy Institute, University of Wisconsin-Madison, Madison, WI, USA.
Yi SunState Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin, China.
Barbara De MeesterDepartment of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium.
Jan Van DoorsselaereVIVES, Roeselare, Belgium.
Geert GoeminneDepartment of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium.
Vincent L ChiangState Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin, China.
Jack P WangState Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin, China.
John RalphDepartment of Biochemistry, and U.S. Department of Energy Great Lakes Bioenergy Research Center, Wisconsin Energy Institute, University of Wisconsin-Madison, Madison, WI, USA.
Kris MorreelDepartment of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium.
Ruben VanholmeDepartment of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium.
Wout BoerjanDepartment of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium.ORCID 0000-0003-1495-510X
Ghent University · BEUniversity of Wisconsin–Madison · USNorth Carolina State University · USKatholieke Hogeschool Vives · BENortheast Forestry University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Lignins are cell wall-located aromatic polymers that provide strength and hydrophobicity to woody tissues. Lignin monomers are synthesized via the phenylpropanoid pathway, wherein CAFFEOYL SHIKIMATE ESTERASE (CSE) converts caffeoyl shikimate into caffeic acid. Here, we explored the role of the two CSE homologs in poplar (Populus tremula × P. alba). Reporter lines showed that the expression conferred by both CSE1 and CSE2 promoters is similar. CRISPR-Cas9-generated cse1 and cse2 single mutants had a wild-type lignin level. Nevertheless, CSE1 and CSE2 are not completely redundant, as both single mutants accumulated caffeoyl shikimate. In contrast, the cse1 cse2 double mutants had a 35% reduction in lignin and associated growth penalty. The reduced-lignin content translated into a fourfold increase in cellulose-to-glucose conversion upon limited saccharification. Phenolic profiling of the double mutants revealed large metabolic shifts, including an accumulation of p-coumaroyl, 5-hydroxyferuloyl, feruloyl and sinapoyl shikimate, in addition to caffeoyl shikimate. This indicates that the CSEs have a broad substrate specificity, which was confirmed by in vitro enzyme kinetics. Taken together, our results suggest an alternative path within the phenylpropanoid pathway at the level of the hydroxycinnamoyl-shikimates, and show that CSE is a promising target to improve plants for the biorefinery.

Indexed as

PopulusCarboxylesteraseCRISPR-Cas SystemsGene Expression Regulation, PlantLigninPlants, Genetically ModifiedCarboxylesteraseCes1c protein, mouseLigninCRISPR-Cas9CSEligninmetabolic engineeringphenylpropanoidspoplar

Identifiers

PMID34160888
PMCPMC8541784
OpenAlexW3175435121

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.