Evidence map›Paper›PMID 34159791›Full record

ArticleAmerican journal of physiology. Lung cellular and molecular physiology2021

Toll-like receptors, environmental caging, and lung dysbiosis.

Jay H Lipinski, Nicole R Falkowski, Gary B Huffnagle, John R Erb-Downward, Robert P Dickson, Beth B Moore, David N O'Dwyer

Abstract read
In one paragraph

Article in American journal of physiology. Lung cellular and molecular physiology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Reply to Pantaleón García et al.American journal of physiology. Lung cellular and molecular physiology · 2022
    Article
  6. Minimizing caging effects in murine lung microbiome studies.American journal of physiology. Lung cellular and molecular physiology · 2022
    Article
  7. Toll-Interacting Protein and Altered Lung Microbiota in Idiopathic Pulmonary Fibrosis.American journal of respiratory and critical care medicine · 2022
    Article
  8. Review
  9. Review
  10. Article
  11. Toll-like receptors: shapers of the pulmonary microbiome?American journal of physiology. Lung cellular and molecular physiology · 2021
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors.

Jay H LipinskiDivision of Pulmonary and Critical Care Medicine, University of Michigan Medical School, Ann Arbor, Michigan.
Nicole R FalkowskiDepartment of Molecular, Cellular and Developmental Biology, University of Michigan, Ann Arbor, Michigan.
Gary B HuffnagleDivision of Pulmonary and Critical Care Medicine, University of Michigan Medical School, Ann Arbor, Michigan.
John R Erb-DownwardDivision of Pulmonary and Critical Care Medicine, University of Michigan Medical School, Ann Arbor, Michigan.
Robert P DicksonDivision of Pulmonary and Critical Care Medicine, University of Michigan Medical School, Ann Arbor, Michigan.ORCID 0000-0002-6875-4277
Beth B MooreDivision of Pulmonary and Critical Care Medicine, University of Michigan Medical School, Ann Arbor, Michigan.ORCID 0000-0003-3051-745X
David N O'DwyerDivision of Pulmonary and Critical Care Medicine, University of Michigan Medical School, Ann Arbor, Michigan.ORCID 0000-0003-3214-380X

Funding

Immunobiology of Lung Injury and FibrosisR35HL144481 · NHLBI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI MOORE, BETHANY B. · 2019 to 2024
$5.2M
Functional Analysis of the Pulmonary Microbiome during COPDR01HL121774 · NHLBI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI HUFFNAGLE, GARY B · 2017 to 2020
$3.1M
Neonatal RSV infection and alteration of allergic immune responsesR01AI138348 · NIAID · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI HUFFNAGLE, GARY B, LUKACS, NICHOLAS W · 2018 to 2022
$2.2M
Toll-like Receptors and Respiratory Microbiota Interactions in Idiopathic PulmonaryR00HL139996 · NHLBI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI O'DWYER, DAVID NOEL · 2020 to 2022
$747k
Toll-like receptors and respiratory microbiota interactions in idiopathic pulmonary fibrosisK99HL139996 · NHLBI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI O'DWYER, DAVID NOEL · 2018 to 2019
$265k
HHS | NIH | National Heart, Lung, and Blood Institute (NHLBI) HL121774HHS | NIH | National Heart, Lung, and Blood Institute (NHLBI) HL139996HHS | NIH | National Institute of Allergy and Infectious Diseases (NIAID) AI138348NHLBI NIH HHS K99 HL139996NHLBI NIH HHS R00 HL139996NHLBI NIH HHS R01 HL121774NHLBI NIH HHS R35 HL144481NIAID NIH HHS R01 AI138348
6 · The paper itself

Abstract

Recent studies have implicated lung microbiota in shaping local alveolar immune responses. Toll-like receptors are major sensors of microbiota and determinants of local epithelial homeostasis. The impact of toll-like receptor deficiency on lung microbiota is unknown. To determine whether the absence of toll-like receptors results in altered lung microbiota or dysbiosis, we compared lung microbiota in wild-type and toll-like receptor-deficient experimental mice using 16S ribosomal RNA gene quantification and sequencing. We used a randomized environmental caging strategy to determine the impact of toll-like receptors on lung microbiota. Lung microbiota are detectable in toll-like receptor-deficient experimental mice and exhibit considerable variability. The lung microbiota of toll-like receptor-deficient mice are altered in community composition (PERMANOVA

Indexed as

BacteriaMicrobiotaAnimalsDysbiosisLungMiceRNA, BacterialRNA, Ribosomal, 16SToll-Like ReceptorsRNA, BacterialRNA, Ribosomal, 16SToll-Like Receptorscagelung microbiometoll-like receptors

Identifiers

PMID34159791
PMCPMC8410110

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.