Evidence map›Paper›PMID 34159322›Full record

ArticleSTAR protocols2021

Protocol to extract actively translated mRNAs from mouse hypothalamus by translating ribosome affinity purification.

Xingfa Han, Laura L Burger, David Garcia-Galiano, Suzanne M Moenter, Martin G Myers, David P Olson, Carol F Elias

Abstract read
In one paragraph

Article in STAR protocols, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Cotranslational molecular condensation of cochaperones and assembly factors facilitates axonemal dynein biogenesis.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Xingfa HanDepartment of Molecular & integrative Physiology, University of Michigan, Ann Arbor, MI 48109, USA.
Laura L BurgerDepartment of Molecular & integrative Physiology, University of Michigan, Ann Arbor, MI 48109, USA.
David Garcia-GalianoDepartment of Molecular & integrative Physiology, University of Michigan, Ann Arbor, MI 48109, USA.
Suzanne M MoenterDepartment of Molecular & integrative Physiology, University of Michigan, Ann Arbor, MI 48109, USA.
Martin G MyersDepartment of Molecular & integrative Physiology, University of Michigan, Ann Arbor, MI 48109, USA.
David P OlsonDepartment of Molecular & integrative Physiology, University of Michigan, Ann Arbor, MI 48109, USA.
Carol F EliasDepartment of Molecular & integrative Physiology, University of Michigan, Ann Arbor, MI 48109, USA.

Funding

Regional Pilot And Feasibility Study Grants ProgramP30DK020572 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI DAVID P OLSON · 2013 to 2026
$24.3M
MOLECULAR DETERMINANTS OF LEPTIN RECEPTOR/JAK2 SIGNALINGR01DK056731 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI MYERS, MARTIN G · 1999 to 2025
$6.0M
Cellular and molecular bases for rhythmic GnRH releaseR37HD034860 · NICHD · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Suzanne M MOENTER · 2017 to 2026
$5.4M
Neural basis of leptin action on reproductionR01HD069702 · NICHD · UT SOUTHWESTERN MEDICAL CENTER · PI ELIAS, CAROL FUZETI · 2012 to 2021
$3.4M
Unique Roles for Defined PVH Neurons in the Control of Energy BalanceR01DK104999 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI OLSON, DAVID P · 2016 to 2020
$2.5M
Development of the GnRH neuronal network and effects of prenatal androgen exposureR01HD104345 · NICHD · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI MOENTER, SUZANNE M · 2021 to 2025
$2.2M
Integrative Approaches to Decipher Genetic Determinants of Disease Penetrance in Prokineticin 2 Pathway Related Human Reproductive DisordersR01HD096324 · NICHD · MASSACHUSETTS GENERAL HOSPITAL · PI BALASUBRAMANIAN, RAVIKUMAR · 2018 to 2022
$1.7M
Transcriptome analysis of hypothalamic neurons during pubertal transitionR03HD092855 · NICHD · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI ELIAS, CAROL FUZETI · 2018 to 2019
$156k
NICHD NIH HHS R01 HD069702NICHD NIH HHS R01 HD096324NICHD NIH HHS R01 HD104345NICHD NIH HHS R03 HD092855NICHD NIH HHS R37 HD034860NIDDK NIH HHS P30 DK020572NIDDK NIH HHS R01 DK056731NIDDK NIH HHS R01 DK104999
6 · The paper itself

Abstract

Here, we present an in-depth protocol for extracting ribosome-bound mRNAs in low-abundance cells of hypothalamic nuclei. mRNAs are extracted from the micropunched tissue using refined translating ribosome affinity purification. Isolated RNAs can be used for sequencing or transcript quantification. This protocol enables the identification of actively translated mRNAs in varying physiological states and can be modified for use in any neuronal subpopulation labeled with a ribo-tag. We use leptin receptor-expressing neurons as an example to illustrate the protocol. For complete details on the use and execution of this protocol, please refer to Han et al. (2020).

Indexed as

AnimalsChromatography, AffinityGreen Fluorescent ProteinsHypothalamusMiceNeuronsRibosomesRNA, MessengerGreen Fluorescent ProteinsRNA, MessengerGene ExpressionNeuroscienceProtein Biochemistry

Identifiers

PMID34159322
PMCPMC8196219

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.