Evidence map›Paper›PMID 34157973›Full record

ArticleBMC genomics2021

Genome analysis of Pseudomonas sp. OF001 and Rubrivivax sp. A210 suggests multicopper oxidases catalyze manganese oxidation required for cylindrospermopsin transformation.

Erika Berenice Martínez-Ruiz, Myriel Cooper, Jimena Barrero-Canosa, Mindia A S Haryono, Irina Bessarab, Rohan B H Williams, Ulrich Szewzyk

Open access · goldAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in BMC genomics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.3field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 5 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Erika Berenice Martínez-RuizChair of Environmental Microbiology, Technische Universität Berlin, Institute of Environmental Technology, Straße des 17. Juni 135, 10623, Berlin, Germany. erika.b.martinezruiz@campus.tu-berlin.de.
Myriel CooperChair of Environmental Microbiology, Technische Universität Berlin, Institute of Environmental Technology, Straße des 17. Juni 135, 10623, Berlin, Germany. myriel.cooper@tu-berlin.de.ORCID http://orcid.org/0000-0002-7124-1675
Jimena Barrero-CanosaChair of Environmental Microbiology, Technische Universität Berlin, Institute of Environmental Technology, Straße des 17. Juni 135, 10623, Berlin, Germany.
Mindia A S HaryonoSingapore Centre for Environmental Life Sciences Engineering, National University of Singapore, Singapore, 119077, Singapore.
Irina BessarabSingapore Centre for Environmental Life Sciences Engineering, National University of Singapore, Singapore, 119077, Singapore.
Rohan B H WilliamsSingapore Centre for Environmental Life Sciences Engineering, National University of Singapore, Singapore, 119077, Singapore.
Ulrich SzewzykChair of Environmental Microbiology, Technische Universität Berlin, Institute of Environmental Technology, Straße des 17. Juni 135, 10623, Berlin, Germany.
Technische Universität Berlin · DENational University of Singapore · SG

Funding

Deutscher Akademischer Austauschdienst 91614247
6 · The paper itself

Abstract

backgroundCylindrospermopsin is a highly persistent cyanobacterial secondary metabolite toxic to humans and other living organisms. Strain OF001 and A210 are manganese-oxidizing bacteria (MOB) able to transform cylindrospermopsin during the oxidation of Mn

resultsStrain OF001 encodes two multicopper oxidases and one haem peroxidase potentially involved in Mn

conclusionsThe genomes of Pseudomonas sp. OF001 and Rubrivivax sp. A210 encode sequences with high similarity to already described MCOs which may catalyze manganese oxidation required for cylindrospermopsin transformation. Furthermore, the analysis of the general metabolism of two MOB strains may contribute to a better understanding of the niches of cylindrospermopsin-removing MOB in natural habitats and their implementation in biotechnological applications to treat water.

Indexed as

AlkaloidsManganeseOxidoreductasesBurkholderialesCyanobacteria ToxinsGenome, BacterialLeptothrixOxidation-ReductionPseudomonasAlkaloidsCyanobacteria ToxinscylindrospermopsinManganeseOxidoreductasesBiotransformationCyanotoxinsManganese-oxidizing bacteriaMetabolic potential

Identifiers

PMID34157973
PMCPMC8218464
OpenAlexW3176788251

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.