Evidence map›Paper›PMID 34157681›Full record

ArticleAging2021

Deoxyribonuclease 1-like 3 may be a potential prognostic biomarker associated with immune infiltration in colon cancer.

Jing Liu, Jingya Yi, Zhihong Zhang, Donglin Cao, Lei Li, Yachao Yao

Open access · greenAbstract read
In one paragraph

Article in Aging, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
3.4field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 40 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Jing LiuDepartment of Laboratory Medicine, Guangdong Second Provincial General Hospital, Guangzhou 510317, China.
Jingya YiDepartment of Laboratory Medicine, Guangdong Second Provincial General Hospital, Guangzhou 510317, China.
Zhihong ZhangDepartment of Laboratory Medicine, Guangdong Second Provincial General Hospital, Guangzhou 510317, China.
Donglin CaoDepartment of Laboratory Medicine, Guangdong Second Provincial General Hospital, Guangzhou 510317, China.
Lei LiCenter for Reproductive Medicine, The Third Affiliated Hospital of Guangzhou Medical University, Guangzhou 510150, China.
Yachao YaoDepartment of Laboratory Medicine, Guangdong Second Provincial General Hospital, Guangzhou 510317, China.
Guangdong Provincial People's Hospital · CNGuangzhou Medical University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Colon adenocarcinoma (COAD) is a common cancer of the digestive system. It's high morbidity and mortality make it one of the leading causes of cancer deaths. In this study, we studied the microenvironment of colon cancer to find new diagnostic markers and immunotherapy targets for colon cancer. Tumor purity of colon cancer samples in TCGA database were obtained by ESTIMATE algorithm. Then, we analyzed the association of Immune, Stromal, and Estimate scores with tumor prognosis and clinicopathological features. By comparing the gene expression profiles between tumor and normal samples, the high and low immune score groups, 117 intersecting differentially expressed genes (DEGs) were obtained. The function, molecular pathway, and prognostic value of these 117 DEGs pointed toward the importance of deoxyribonuclease 1-like 3 (DNASE1L3). Validation results from multiple databases showed low expression of DNASE1L3 in colon cancer. A single GSEA and correlation analysis of immune cells indicated that DNASE1L3 was closely related to immunity. The low expression of DNASE1L3 in colon cancer samples was measured with qRT-PCR. The scratch and cell proliferation experiments suggested that DNASE1L3 may affect cell migration. Therefore, we concluded that DNASE1L3 might be a biomarker associated with prognosis and immune infiltration in colon cancer.

Indexed as

Biomarkers, TumorCell Line, TumorCell MovementCell ProliferationColonic NeoplasmsDatabases, GeneticEndodeoxyribonucleasesGene Expression Regulation, NeoplasticHumansLymphocytes, Tumor-InfiltratingPrognosisProtein Interaction MapsReproducibility of ResultsSurvival AnalysisTranscriptomeBiomarkers, TumorDNASE1L3 protein, humanEndodeoxyribonucleasescolon adenocarcinomadeoxyribonuclease 1-like 3immune infiltrationThe Cancer Genome Atlas (TCGA) Databasetumor microenvironment

Identifiers

PMID34157681
PMCPMC8266351
OpenAlexW3175258065

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.