Evidence map›Paper›PMID 34157651›Full record

ReviewCurrent opinion in chemical biology2021

A chemical field guide to histone nonenzymatic modifications.

Sarah Faulkner, Igor Maksimovic, Yael David

Abstract readReview
In one paragraph

Review in Current opinion in chemical biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Epigenetic meets metabolism: novel vulnerabilities to fight cancer.Cell communication and signaling : CCS · 2023
    Review
  6. Review
  7. Chromatin structure in cancer.BMC molecular and cell biology · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Sarah FaulknerChemical Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY 10065, United States.
Igor MaksimovicChemical Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY 10065, United States; Tri-Institutional PhD Program in Chemical Biology, New York, NY 10065, United States.
Yael DavidChemical Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY 10065, United States; Tri-Institutional PhD Program in Chemical Biology, New York, NY 10065, United States; Department of Pharmacology, Weill Cornell Medicine, New York, NY 10065, United States; Department of Physiology, Biophysics and Systems Biology, Weill Cornell Medicine, New York, NY 10065, United States. Electronic address: davidshy@mskcc.org.

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI SELWYN M VICKERS · 1985 to 2026
$347.4M
Translating Stress Response Targeted Therapy for B-Cell LymphomasP50CA192937 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI DALLA-FAVERA, RICCARDO, ZELENETZ, ANDREW D. · 2016 to 2020
$10.9M
Investigating histone glycation as a new dynamic epigenetic markR35GM138386 · NIGMS · SLOAN-KETTERING INST CAN RESEARCH · PI DAVID-SHTERNBERG, YAEL E · 2020 to 2024
$2.2M
Application of intein-based chemical methods to directly manipulate neuronal histone modifications in rodent models of addictionR21DA044767 · NIDA · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI DAVID-SHTERNBERG, YAEL E, MAZE, IAN S. · 2018 to 2019
$444k
NCI NIH HHS P30 CA008748NCI NIH HHS P50 CA192937NIDA NIH HHS R21 DA044767NIGMS NIH HHS R35 GM138386
6 · The paper itself

Abstract

Histone nonenzymatic covalent modifications (NECMs) have recently emerged as an understudied class of posttranslational modifications that regulate chromatin structure and function. These NECMs alter the surface topology of histone proteins, their interactions with DNA and chromatin regulators, as well as compete for modification sites with enzymatic posttranslational modifications. NECM formation depends on the chemical compatibility between a reactive molecule and its target site, in addition to their relative stoichiometries. Here we survey the chemical reactions and conditions that govern the addition of NECMs onto histones as a manual to guide the identification of new physiologically relevant chemical adducts. Characterizing NECMs on chromatin is critical to attain a comprehensive understanding of this new chapter of the so-called "histone code".

Indexed as

AcylationAntioxidantsBinding SitesChromatinDNAEpigenesis, GeneticFree Radical ScavengersHistone CodeHistonesHumansMolecular ConformationPolysaccharidesProtein BindingProtein Processing, Post-TranslationalReactive Oxygen SpeciesAntioxidantsChromatinDNAFree Radical ScavengersHistonesPolysaccharidesReactive Oxygen SpeciesAcylationAntioxidantEpigeneticsGlycationHistoneLipidationNon-enzymatic covalent modificationsNucleosomePost-translational modification

Identifiers

PMID34157651
PMCPMC9063854

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.