Evidence map›Paper›PMID 34157370›Full record

ArticleJournal of neuroscience methods2021

Automated segmentation of choroidal layers from 3-dimensional macular optical coherence tomography scans.

Kyungmoo Lee, Alexis K Warren, Michael D Abràmoff, Andreas Wahle, S Scott Whitmore, Ian C Han, John H Fingert, Todd E Scheetz, Robert F Mullins, Milan Sonka and 1 more

Abstract read
In one paragraph

Article in Journal of neuroscience methods, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Cardiac Adipose Tissue Segmentation via Image-Level Annotations.IEEE journal of biomedical and health informatics · 2023
    Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Kyungmoo LeeIowa Institute for Biomedical Imaging, University of Iowa, Iowa City, IA, United States; Department of Electrical and Computer Engineering, University of Iowa, Iowa City, IA, United States.
Alexis K WarrenDepartment of Ophthalmology and Visual Sciences, University of Iowa Hospitals and Clinics, Iowa City, IA, United States.
Michael D AbràmoffIowa Institute for Biomedical Imaging, University of Iowa, Iowa City, IA, United States; Department of Electrical and Computer Engineering, University of Iowa, Iowa City, IA, United States; Department of Ophthalmology and Visual Sciences, University of Iowa Hospitals and Clinics, Iowa City, IA, United States; Department of Biomedical Engineering, University of Iowa, Iowa City, IA, United States; Institute for Vision Research, University of Iowa, Iowa City, IA, United States; Veterans Affairs Medical Center, Iowa City, IA, United States; IDx, Coralville, IA, United States.
Andreas WahleIowa Institute for Biomedical Imaging, University of Iowa, Iowa City, IA, United States; Department of Electrical and Computer Engineering, University of Iowa, Iowa City, IA, United States.
S Scott WhitmoreDepartment of Ophthalmology and Visual Sciences, University of Iowa Hospitals and Clinics, Iowa City, IA, United States; Institute for Vision Research, University of Iowa, Iowa City, IA, United States.
Ian C HanDepartment of Ophthalmology and Visual Sciences, University of Iowa Hospitals and Clinics, Iowa City, IA, United States; Institute for Vision Research, University of Iowa, Iowa City, IA, United States.
John H FingertDepartment of Ophthalmology and Visual Sciences, University of Iowa Hospitals and Clinics, Iowa City, IA, United States; Institute for Vision Research, University of Iowa, Iowa City, IA, United States.
Todd E ScheetzIowa Institute for Biomedical Imaging, University of Iowa, Iowa City, IA, United States; Department of Ophthalmology and Visual Sciences, University of Iowa Hospitals and Clinics, Iowa City, IA, United States; Department of Biomedical Engineering, University of Iowa, Iowa City, IA, United States; Institute for Vision Research, University of Iowa, Iowa City, IA, United States.
Robert F MullinsDepartment of Ophthalmology and Visual Sciences, University of Iowa Hospitals and Clinics, Iowa City, IA, United States; Institute for Vision Research, University of Iowa, Iowa City, IA, United States.
Milan SonkaIowa Institute for Biomedical Imaging, University of Iowa, Iowa City, IA, United States; Department of Electrical and Computer Engineering, University of Iowa, Iowa City, IA, United States; Department of Ophthalmology and Visual Sciences, University of Iowa Hospitals and Clinics, Iowa City, IA, United States.
Elliott H SohnDepartment of Ophthalmology and Visual Sciences, University of Iowa Hospitals and Clinics, Iowa City, IA, United States; Institute for Vision Research, University of Iowa, Iowa City, IA, United States. Electronic address: Elliott.sohn@gmail.com.

Funding

Stem Cell and Organoid CoreP30EY025580 · NEI · UNIVERSITY OF IOWA · PI Michael G Anderson, Robert Foster Mullins · 2016 to 2026
$6.9M
Graph-Based Medical Image Segmentation in 3D and 4DR01EB004640 · NIBIB · UNIVERSITY OF IOWA · PI BUATTI, JOHN M, SONKA, MILAN · 2006 to 2022
$6.1M
Choroidal Disease Mechanisms in AMDR01EY026547 · NEI · UNIVERSITY OF IOWA · PI SOHN, ELLIOTT H · 2016 to 2020
$1.9M
NEI NIH HHS P30 EY025580NEI NIH HHS R01 EY026547NIBIB NIH HHS R01 EB004640
6 · The paper itself

Abstract

backgroundChanges in choroidal thickness are associated with various ocular diseases, and the choroid can be imaged using spectral-domain optical coherence tomography (SD-OCT) and enhanced depth imaging OCT (EDI-OCT). NEW

methodEighty macular SD-OCT volumes from 80 patients were obtained using the Zeiss Cirrus machine. Eleven additional control subjects had two Cirrus scans done in one visit along with enhanced depth imaging (EDI-OCT) using the Heidelberg Spectralis machine. To automatically segment choroidal layers from the OCT volumes, our graph-theoretic approach was utilized. The segmentation results were compared with reference standards from two independent graders, and the accuracy of automated segmentation was calculated using unsigned/signed border positioning/thickness errors and Dice similarity coefficient (DSC). The repeatability and reproducibility of our choroidal thicknesses were determined by intraclass correlation coefficient (ICC), coefficient of variation (CV), and repeatability coefficient (RC).

resultsThe mean unsigned/signed border positioning errors for the choroidal inner and outer surfaces are 3.39 ± 1.26 µm (mean ± standard deviation)/- 1.52 ± 1.63 µm and 16.09 ± 6.21 µm/4.73 ± 9.53 µm, respectively. The mean unsigned/signed choroidal thickness errors are 16.54 ± 6.47 µm/6.25 ± 9.91 µm, and the mean DSC is 0.949 ± 0.025. The ICC (95% confidence interval), CV, RC values are 0.991 (0.977-0.997), 2.48%, 14.25 µm for the repeatability and 0.991 (0.977-0.997), 2.49%, 14.30 µm for the reproducibility studies, respectively. COMPARISON WITH EXISTING METHOD(S): The proposed method outperformed our previous method using choroidal vessel segmentation and inter-grader variability.

conclusionsThis automated segmentation method can reliably measure choroidal thickness using different OCT platforms.

Indexed as

ChoroidTomography, Optical CoherenceHumansReproducibility of Results

Identifiers

PMID34157370
PMCPMC8324559

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.