Evidence map›Paper›PMID 34157021›Full record

ArticlePLoS genetics2021

An enhancer screen identifies new suppressors of small-RNA-mediated epigenetic gene silencing.

Yukiko Shimada, Sarah H Carl, Merle Skribbe, Valentin Flury, Tahsin Kuzdere, Georg Kempf, Marc Bühler

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.4field-weighted citation impact, top 41% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Yukiko ShimadaFriedrich Miescher Institute for Biomedical Research, Basel, Switzerland.
Sarah H CarlFriedrich Miescher Institute for Biomedical Research, Basel, Switzerland.ORCID 0000-0003-3927-2559
Merle SkribbeFriedrich Miescher Institute for Biomedical Research, Basel, Switzerland.
Valentin FluryFriedrich Miescher Institute for Biomedical Research, Basel, Switzerland.ORCID 0000-0003-0476-4940
Tahsin KuzdereFriedrich Miescher Institute for Biomedical Research, Basel, Switzerland.
Georg KempfFriedrich Miescher Institute for Biomedical Research, Basel, Switzerland.ORCID 0000-0002-0228-6730
Marc BühlerFriedrich Miescher Institute for Biomedical Research, Basel, Switzerland.ORCID 0000-0001-6661-9795
University of Basel · CHFriedrich Miescher Institute · CHSIB Swiss Institute of Bioinformatics · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Small non-protein coding RNAs are involved in pathways that control the genome at the level of chromatin. In Schizosaccharomyces pombe, small interfering RNAs (siRNAs) are required for the faithful propagation of heterochromatin that is found at peri-centromeric repeats. In contrast to repetitive DNA, protein-coding genes are refractory to siRNA-mediated heterochromatin formation, unless siRNAs are expressed in mutant cells. Here we report the identification of 20 novel mutant alleles that enable de novo formation of heterochromatin at a euchromatic protein-coding gene by using trans-acting siRNAs as triggers. For example, a single amino acid substitution in the pre-mRNA cleavage factor Yth1 enables siRNAs to trigger silent chromatin formation with unparalleled efficiency. Our results are consistent with a kinetic nascent transcript processing model for the inhibition of small-RNA-directed de novo formation of heterochromatin and lay a foundation for further mechanistic dissection of cellular activities that counteract epigenetic gene silencing.

Indexed as

Gene Expression Regulation, FungalGene SilencingAllelesAmino Acid SubstitutionCentromereChromatin Assembly and DisassemblyGene Expression ProfilingHeterochromatinKineticsModels, GeneticMolecular Sequence AnnotationmRNA Cleavage and Polyadenylation FactorsMutationRNA, MessengerRNA, Small InterferingSchizosaccharomycesHeterochromatinmRNA Cleavage and Polyadenylation FactorsRNA, MessengerRNA, Small Interfering

Identifiers

PMID34157021
PMCPMC8253403
OpenAlexW3175844080

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.