Evidence map›Paper›PMID 34156974›Full record

ArticleThe Journal of clinical investigation2021

Canonical features of human antibodies recognizing the influenza hemagglutinin trimer interface.

Seth J Zost, Jinhui Dong, Iuliia M Gilchuk, Pavlo Gilchuk, Natalie J Thornburg, Sandhya Bangaru, Nurgun Kose, Jessica A Finn, Robin Bombardi, Cinque Soto and 11 more

Erratum issuedOpen access · bronzeAbstract read
In one paragraph

Article in The Journal of clinical investigation, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
4.5field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 41 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Human coronavirus HKU1 neutralization by glycan receptor mimicry.bioRxiv : the preprint server for biology · 2025
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

21 authors at 4 institutions in 1 country.

Seth J ZostThe Vanderbilt Vaccine Center and.
Jinhui DongThe Vanderbilt Vaccine Center and.
Iuliia M GilchukThe Vanderbilt Vaccine Center and.
Pavlo GilchukThe Vanderbilt Vaccine Center and.
Natalie J ThornburgThe Vanderbilt Vaccine Center and.
Sandhya BangaruDepartment of Pathology, Microbiology, and Immunology, Vanderbilt University Medical Center, Nashville, Tennessee, USA.
Nurgun KoseThe Vanderbilt Vaccine Center and.
Jessica A FinnThe Vanderbilt Vaccine Center and.
Robin BombardiThe Vanderbilt Vaccine Center and.
Cinque SotoThe Vanderbilt Vaccine Center and.
Elaine C ChenThe Vanderbilt Vaccine Center and.
Rachel S NargiThe Vanderbilt Vaccine Center and.
Rachel E SuttonThe Vanderbilt Vaccine Center and.
Ryan P IrvingThe Vanderbilt Vaccine Center and.
Naveenchandra SuryadevaraThe Vanderbilt Vaccine Center and.
Jonna B WestoverDepartment of Animal, Dairy, and Veterinary Sciences, Utah State University, Logan, Utah, USA.
Robert H CarnahanThe Vanderbilt Vaccine Center and.
Hannah L TurnerDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, California, USA.
Sheng LiDepartment of Medicine and Biomedical Sciences, School of Medicine, University of California, San Diego, California, USA.
Andrew B WardDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, California, USA.
James E CroweThe Vanderbilt Vaccine Center and.
Vanderbilt University Medical Center · USScripps Research Institute · USUniversity of California System · USUtah State University · US

Funding

Vanderbilt Institute for Clinical and Translational Research (VICTR) -Identifying correlates of functional immunity in SARS-CoV-2 convalescent plasmaUL1TR002243 · NCATS · VANDERBILT UNIVERSITY MEDICAL CENTER · PI Paul A. Harris, Wesley H Self · 2017 to 2026
$130.7M
Structure based design of antibodies and vaccinesU19AI117905 · NIAID · VANDERBILT UNIVERSITY MEDICAL CENTER · PI CROWE, JAMES E · 2015 to 2019
$12.0M
Structure based design of trimer interface epitope focused universal influenza vaccinesU01AI150739 · NIAID · VANDERBILT UNIVERSITY MEDICAL CENTER · PI CROWE, JAMES E · 2020 to 2024
$6.1M
Childhood Infections Research ProgramT32AI095202 · NIAID · VANDERBILT UNIVERSITY MEDICAL CENTER · PI JAMES E CASSAT · 2011 to 2026
$4.2M
Structural Determinants of Allosteric Modulation of Brain GPCRsR01DA046138 · NIDA · VANDERBILT UNIVERSITY · PI MEILER, JENS · 2019 to 2023
$2.0M
High-Performance Computer Cluster for Biomedical ResearchS10OD023680 · OD · VANDERBILT UNIVERSITY · PI MEILER, JENS · 2017 to 2017
$587k
Hybrid Methods for Prediction and Design of Novel Human Influenza AntibodiesR56AI110750 · NIAID · VANDERBILT UNIVERSITY · PI CROWE, JAMES E, MEILER, JENS · 2014 to 2014
$433k
NCATS NIH HHS UL1 TR002243NIAID NIH HHS HHSN272201400024CNIAID NIH HHS HHSN272201700041INIAID NIH HHS R56 AI110750NIAID NIH HHS T32 AI095202NIAID NIH HHS U01 AI150739NIAID NIH HHS U19 AI117905NIDA NIH HHS R01 DA046138NIH HHS S10 OD023680
6 · The paper itself

Abstract

Broadly reactive antibodies targeting the influenza A virus hemagglutinin (HA) head domain are thought to be rare and to require extensive somatic mutations or unusual structural features to achieve breadth against divergent HA subtypes. Here we describe common genetic and structural features of protective human antibodies from several individuals recognizing the trimer interface (TI) of the influenza A HA head, a recently identified site of vulnerability. We examined the sequence of TI-reactive antibodies, determined crystal structures for TI antibody-antigen complexes, and analyzed the contact residues of the antibodies on HA to discover common genetic and structural features of TI antibodies. Our data reveal that many TI antibodies are encoded by a light chain variable gene segment incorporating a shared somatic mutation. In addition, these antibodies have a shared acidic residue in the heavy chain despite originating from diverse heavy chain variable gene segments. These studies show that the TI region of influenza A HA is a major antigenic site with conserved structural features that are recognized by a common human B cell public clonotype. The canonical nature of this antibody-antigen interaction suggests that the TI epitope might serve as an important target for structure-based vaccine design.

Indexed as

Antibodies, NeutralizingAntibodies, ViralEpitopesHemagglutinin Glycoproteins, Influenza VirusHumansInfluenza A Virus, H1N1 SubtypeInfluenza VaccinesAntibodies, NeutralizingAntibodies, ViralEpitopesHemagglutinin Glycoproteins, Influenza VirusInfluenza VaccinesImmunoglobulinsImmunologyInfluenza

Identifiers

PMID34156974
PMCPMC8321569
OpenAlexW3177093529

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.