Evidence map›Paper›PMID 34156445›Full record

ArticleDatabase : the journal of biological databases and curation2021

Which methods are the most effective in enabling novice users to participate in ontology creation? A usability study.

Limin Zhang, Xingyi Yang, Zuleima Cota, Hong Cui, Bruce Ford, Hsin-Liang Chen, James A Macklin, Anton Reznicek, Julian Starr

Abstract read
In one paragraph

Article in Database : the journal of biological databases and curation, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Limin ZhangSchool of Information, University of Arizona, 1103 E. Second Street, Tucson, AZ 85705, USA.ORCID 0000-0002-5578-3271
Xingyi YangSchool of Information, University of Arizona, 1103 E. Second Street, Tucson, AZ 85705, USA.
Zuleima CotaSchool of Information, University of Arizona, 1103 E. Second Street, Tucson, AZ 85705, USA.
Hong CuiSchool of Information, University of Arizona, 1103 E. Second Street, Tucson, AZ 85705, USA.
Bruce FordDepartment of Biological Sciences, University of Manitoba, 50 Sifton Road, Winnipeg, MB R3T 2N2, Canada.
Hsin-Liang ChenCurtis Laws Wilson Library, Missouri University of Science and Technology, 400 W. 14th Street, Rolla, MO 65409, USA.
James A MacklinInformation protected by Canada government, Agriculture and Agri-Food Canada, Ottawa, ON K1A 0C6, Canada.
Anton ReznicekSLA Herbarium, University of Michigan, 3600 Varsity Drive, Ann Arbor, MI 48019, USA.
Julian StarrDepartment of Biology, University of Ottawa, 30 Marie Curie Road, Ottawa, ON K1N 6N5, Canada.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Producing findable, accessible, interoperable and reusable (FAIR) data cannot be accomplished solely by data curators in all disciplines. In biology, we have shown that phenotypic data curation is not only costly, but it is burdened with inter-curator variation. We intend to propose a software platform that would enable all data producers, including authors of scientific publications, to produce ontologized data at the time of publication. Working toward this goal, we need to identify ontology construction methods that are preferred by end users. Here, we employ two usability studies to evaluate effectiveness, efficiency and user satisfaction with a set of four methods that allow an end user to add terms and their relations to an ontology. Thirty-three participants took part in a controlled experiment where they evaluated the four methods (Quick Form, Wizard, WebProtégé and Wikidata) after watching demonstration videos and completing a hands-on task. Another think-aloud study was conducted with three professional botanists. The efficiency effectiveness and user confidence in the methods are clearly revealed through statistical and content analyses of participants' comments. Quick Form, Wizard and WebProtégé offer distinct strengths that would benefit our author-driven FAIR data generation system. Features preferred by the participants will guide the design of future iterations.

Indexed as

Gene OntologySoftwareHumans

Identifiers

PMID34156445
PMCPMC8218699

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.